BtaINT0050259 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30557587-30558005:+
Coord C1 exon
chr4:30557587-30557743
Coord A exon
chr4:30557744-30557859
Coord C2 exon
chr4:30557860-30558005
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGCCTCACTCCATTGTTTAGTCC
3' ss Score
4.58
Exon sequences
Seq C1 exon
GTGTTACATTACTTTGACTCAGTCCCTTCATCTCACCATGAGTGGGGCTCCAGCTGGCCCGGCTGGAACAGGAAAAACAGAAACCACCAAAGACCTTGGCCGTGCCCTTGGCATGATGGTTTATGTATTCAACTGTTCAGAGCAAATGGACTACAAG
Seq A exon
GTAAGTTATAAAATGATACAGCCTAATAGTATTATTCCTCATCTGGAGTAATTCAAACTAATACCTTAAAACTCTTTTCTGTTTACAAATTCTTAATGCCTCACTCCATTGTTTAG
Seq C2 exon
TCCATAGGAAGTATCTATAAGGGACTGGTGCAGACAGGAGCCTGGGGCTGCTTTGACGAGTTCAATCGAATCTCTGTGGAAGTTCTGTCAGTGGTGTCGGTGCAAGTGAAAATGATACACGATGCCATCAGAAACAGGAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCCCTTCATCTCACCA
R:
TTTTCACTTGCACCGACACCA
Band lengths:
253-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]