RnoINT0049104 @ rn6
Intron Retention
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60202003-60204929:-
Coord C1 exon
chr9:60204057-60204929
Coord A exon
chr9:60202233-60204056
Coord C2 exon
chr9:60202003-60202232
Length
1824 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
AATATTCATTTTAAATTTAGTCA
3' ss Score
3.36
Exon sequences
Seq C1 exon
GTCCTCCGAGTATATTATGATCGCCTTCTGGATAATGCTGATAGAAGCTGGCTTGTTAACTACATACAAGAAATTCTGAGAAATTACATGCAGGAAGATTTTCATGACCTATTTAAAAACTTGGATTTTGATAATGATGGCATTGTAGAAGAAGATGATTTAAGAAGTTTAATGTTCTGTGATTTCCATGATCCTAAAAGGGAAGATTTTGGCTACAGAGAAATTCCAAATGTGGATGCTCTCAGGGTGATTGTAGAAGGCCATTTAGATGAATATAACAACATGAGCAAGAAACCCATGAACCTCGTCTTATTCCGTTTTGCCATAGAACACATAAGTAGAATTTCTCGAATCCTGAAGCAGCCGCGAAGCCACGCCCTCCTGGTGGGGGTTGGCGGGAGCGGAAGGCAGTCAGTCACCCGACTGGCTGCACACATGGCGGATTATTCACTCTTCCAGGTGGAGATCTCCAAGGGCTATGGTAGCCACGAGTGGCATGAAGATCTAAAAGTGATCTTAAGAAAATGTGCAGAAGGTGACATGCAGGGGGTCTTCCTGTTCACAGACACGCAGATCAAGAGAGAGTCGTTTCTAGAAGATGTCAACAATCTCCTAAATGCTGGGGAGGTTCCAAACCTCTTTGCTTTAGATGAGAAGCAAGAAATATGTGAAAAGATGCGTCAGTTAGATCGTCAACGGGATAAAACCAAACAGACAGACGGGAGTCCCATAGCTCTTTTCAACATGTTTATTGACCGCTGCCGCAACCAGCTTCACGTGGTCCTAGCCATGAGTCCCATCGGAGATGCATTTCGGATTCGTCTTCGGAAATTCCCTGCTCTTGTTAACTGCTGTACCATTGATTGGTTTCAG
Seq A exon
GTATTTCCATGTAAAATTTAGGTAGAAATGTTGAATCTCCATCATCATCATAAAATATTTCAGAGACTCCGCCTCAAAATGTAGGCTAGCAAAATCTTTGATTTTTATCATAATGTATCATATGCAGTTATAACAACATAAATCGTTATAGGGCATCATTCATTAATATCAATATACTACAGAAAAGAATTTTAGGATTAATCTGCCCTTCTATCAGGATCCTGATAGGAAGCATCATACTTGAAGTCCTAGCCGAGAAGAGCCTGGGAAGGACTGGTCACAGAAGCATTGTTTGGGGAAGAGAGCCAAGAGGGCATGATGGGAGGACATGTAGAACTCAGACAGACCCCCACCTTCTGGCTTATTCCACCCTCTGCCCTATTTACCAAACAAAACAAGAATCAAAAGGAAAAACACTGTGGGGACTTTTGTAGTATAGCTTTGTTTCAGACAGCACAGGCTGAGACCAGAGAAGCTATGGCAAAGACGGGGGAGAAAAGCAGGAAGTGTATGAGAGAAAAGCAGGAAGTGTATGAGAGAAAAGCAGGAAGTGTATGAGAGAAAAGCAGGAAGTGTATGAGATCGCAGATGCTCCCAGGCTTCCCATGGTACCACGGGGCAGCCTCCCCATTTAGAATACATGAGGGGCTATAGCTGAAATCTGACACAGCCATGTATGATGCTGGAAATTTGCATAGGCTCTATAGCTCTATTGCTTCATAATTTGTTTCAGGTGAGCATCCTTTGTTCCCTTCTTTCTTGCTTTGTACCTTCTGGGTAATATGGTAACAATGACAGATGAAAAGGTACTTACGGGAGCCAAGGCTTTCTACAGACAACCTTTAAAAGGAAAAAGCATAGCAAAGCAAAACAAAACTGACAAGGACCAAGACCTTAGAAGAGATGTGAACTAGTAAAAGTGGGCCTGGGTGGAAGAAAAGGGATTAGGATAATGGGAGCAAAAGAACTCAGAGGGAGGCGTCATGAAAGCTAGGAAAGGCAAAATCAGATAAAAATTTGCGAGTTGGTTGTGATCTTATCACATGGGAAGACTTCCGGAGTTGCACTGGGAAGTGTGCTAAGAGTGTGGTTTATATTTTGAGAAGACATTTTGTGTCTTTCTGGAGAATGAAAGCAGCAAGGCTAACACTGGAGCATATTGGCTAAAGATAACAGAAATGTGTGTGAGAATGGCAGTGGTGTAGAAAGAAGGGAGAGTGTGGAAGTGATCTTAGGGGCGAGATGCCTGTGGAATTTTCTAATGGAGTATACAGAGGTCTGGGGAAGAGGAGGAGAGGAAGGATAATCCCTGTGCTTTGACTCAGACACCTTGGTGACTGATGGTGAAGTTTGCTGAGTTGAGGAAGAATACAGCTCTGATGTGGAGGGAGGAATAGTGGCACAGGCTTGTTGATATTGAGGTGTCTGTGAGCTATCCAAGAGATACCTAGGTTGTGGTCATTTATGGGACTCTGTTGTTTAACAGGAAAGTATAAAAAACGAGAAGAGGATAAAATGAAATAATACATAACACACGCAGGGAAACATTGAATTTAGATCCCTTTCTTTGTCCAGTTAACACTTGGCAACAATGTCTCTAATCCCAGAGTAAACTGGAGAGAGTGCTACCTTCCTCAGGCCACTGTCATTCCACCTTAAGCAGGCAAGGGCAGGAAGAAGGCTCTTGGTGAGCATGTCTTTCCTACTGCGTGCCCCCAAACTATTCCTCTCTGTCCCAGGCCCACATATTGCAAAGGGCCGCTGCAGTAACAGGATCCTGTTACTGACCTTGATGAATTGCTAAAATATTCATTTTAAATTTAG
Seq C2 exon
TCATGGCCAGAAGACGCACTGGAAGCAGTTGCTTCACGGTTCCTGGAAGACATTGAGATGTCAGAGGAAATCCGGGAAGGCTGTATTGACATGTGTAAAAGCTTCCACACTTCTACTATCAACTTATCAACGACCTTCCATAATGAACTTCAAAGATATAATTATGTGACTCCCACCTCTTACCTGGAATTGATCTCTACCTTCAAACTGTTGTTAGAAAAGAAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984:ENSRNOT00000092162:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(0.1=0.0),PF127802=AAA_8=PU(73.2=68.2)
A:
NA
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTGGGGAGGTTCCAAAC
R:
TACAGCCTTCCCGGATTTCCT
Band lengths:
343-2167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]