GgaINT0050156 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10707106-10708962:-
Coord C1 exon
chr7:10708090-10708962
Coord A exon
chr7:10707212-10708089
Coord C2 exon
chr7:10707106-10707211
Length
878 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTTTATCCGTTTGTTATAAACG
3' ss Score
-1.36
Exon sequences
Seq C1 exon
GTCCTTAGAGTATATTATGATCGCTTGGTCGATAATCCTGATCGGGCTTGGCTTGTTGGATTTATCCAAGAAGTTGTGAATAAAGACTTGCATGAAGACTTTCATGAACTTTTTCAGGATCTGGACTCCAATAATGATGGCAGAGTGGAGGAAGATGACTTACGTACCTTAATGTTTTGTGATTTTCATGACCCTAAAAGAGACGACACTAAATATAGAGAGATCACTGATGCAGATCAGCTGAGATTAGTTGTGGAGAGTCACCTTGAAGAGTTTAATAACTTAAGCAAAAAGCCAATGCAGCTAGTCTTGTTCCAATTTGCTATAGAACATATTTGTAGAATTTCCCGTATTCTGAAACAGCCTCGTAGCCATGCCCTCCTTGTTGGTGTTGGAGGTAGTGGTCGACAGTCTCTTACTCGATTAGCAGCCCATATGGCTGAGTATAATCTTTTCCAGGTTGAAATAACTAAAAGTTATGGTATCAATGAATGGCACAAAGACTTAAAAGACATACTAAGAAAATCTACGGAAGCAGAAATGCAGGGAGTTTTCTTGTTCACCGACACACAGATAAAAAAAGAGTCATTCTTAGAAGACATTAACAACTTACTAAATGCAGGTGAAGTGCCAAACCTTTTTGCAGTAGATGAGAAACAAGAAATTTGTGAACAAATGCGTCAAATAGATCGCCAGAGGGACAGGACAAAACAAACTGATGGTAGTCCTATAGCTCTGTTTAACATGTTTGTTGATTGCTGCCGAAATCAGCTTCATATAGTATTGGCAATGAGTCCAATTGGAGATGCTTTCCGTAATCGCCTTCGTAAATTTCCTGCTCTTGTCAACTGCTGCACACTAGACTGGTTTCAG
Seq A exon
GTAAAAAAAAAAAGTATTTGTTTGGCTTGTTTTTCTAATGCAAATGCAGTAGAAACATGAGTTCAATCTTTTTTTTTTTTTTTTCCCCCCAAGTAATTCTGATTAAGATAGCAGTGAAAAATACCTTGGATTTTTTTAGTGTCATGCTTCAAATTGTTTATACAATTAGAATAAACCTGACTGTAATAAAAGCTAATATAGGAAGAATACAAAATCATCAAGAAAATAAATGTCTGATTGTGGTATAGGACTATAACTGAATGAACGTAGTACTGTAGACATAATAGATTTAAAAATGAATTGTTTTCTATTATTACAAGGGGTACCAGAATCTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTGCAACTGTAATCTCTGTAAAAAATAAAAGAAAATGGCAAACAAACAGAAACACATCTTTTTGATGTGGACCACTACATTTTCCCTACTACACTGCAATAAGACTGTATTCTGCATGTGACATGCTCAAGTCCTTACAAGATTTAAAGAATATGTAATCCATAAAGTTTTAAAAGGTCCCGCTGTAACTTTAAAAGTTTTTTTTGAAAAAGAGTAACAATCTTACACCAATATGGACATATTGAAAATGTGAGATTTTCCTTTTAGTAAGTGTTTCCTCTAAATGAAATAAAACAGGAGGCTTGAGCTACAAGTCTAGGTATCTGAGTTATTTCTACTTATGTTGTTGTTCTCTTCTATAATGATAATGCAGGTCATTTCTTTATGTCTCAGTATCTTCATCTATGAAGTGGGATAAAAATTTTTGCTTTTGTTTTGTAAAACGTTTTGATATTTATAAGTGTGAAGTACTGAGTAAAAGAACTGTTTATCCGTTTGTTATAA
Seq C2 exon
ACGTGGCCTGAAAATGCATTGGAAGCAGTTCCCTCTCCCTTCTTGGAAGATGTTGAAATGTCAAAAGAAACTCGAAGTGGGTGTATTGACATGTGTAAAAGCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=WD(100=9.6),PF127802=AAA_8=PU(75.1=68.4)
A:
NA
C2:
PF127802=AAA_8=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTTCACCGACACACAGA
R:
CCAATGCATTTTCAGGCCACG
Band lengths:
342-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]