DreINT0058164 @ danRer10
Intron Retention
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25181803-25183042:-
Coord C1 exon
chr9:25182170-25183042
Coord A exon
chr9:25182033-25182169
Coord C2 exon
chr9:25181803-25182032
Length
137 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ATCATTGTATGTTTCAAAAGAGC
3' ss Score
3.53
Exon sequences
Seq C1 exon
GTCCTGAGAGTGTATTATGACCGTTTAGTTCATCCGGATGATTGTGCATGGATGGTGGGCTTCCTGCAAGAAGTCTCCAAATCTCACCTGAATGAAGATTTCCATCAGCTCTTCAAGCATCTAGACAGCAACTCAGATGGACTTGTAACTGAAGATGATCTTCGCAGCCTCATGTTCTGTGATTTTCATGACCCCAAGGGTGAGGACCGCAACTACCGTGAAGTGGGTGATGCTGAGAAGCTCCGTCAAGTGGTGGAGACCCATCTTGAAGAGTACAATAATATCAGCAAGGCTCCCATGAATCTTGTACTTTTCCGATTTGCCATTGAGCATGTTTGTCGAATCTCCCGCATTCTCAAGCAGCCCCGTGGTCATGCTCTCCTTGTAGGTGTTGGAGGGAGTGGACGACAGTCATTGACTCGCTTGGCCGCCCACATGGCTGAAGCCGAACTCTTCCAAGTAGAGATCTCCAAGAGTTATGGAGTTTCCGAATGGCGAGACGACCTCAAACTCATCATGCAAAAATCAACATCTGGGGATACTCATGGAGTCTTCCTATTCACAGACACCCAGATTAAGATGGAGTCATTTTTAGAAGATGTGAGTAACTTGTTAAACACTGGTGAAGTTCCCAATCTCTTTGCTGTAGATGAGAAGCAGGAGATTTGTGAGCGCATGCGTGTCTTGGACCGTCAGCGGGATCGTGACAAGCAGACGGATGGCAGCACGCTGGCTCTCTTTAACATGTTTTTAGAGCGCTGTCGCAGTCAGTTGCACGTGGTGCTAGCCATGAGTCCTATTGGTGATACCTTCAGAAGCCGCCTGCGACGTTTCCCTGCTCTCATTAACTGCTGCACTATTGACTGGTTTCAG
Seq A exon
GTTGGTGTTAATGTGAATCATATGCTTTGTTAAATGCTATTTTAATATCATTGATATTCCACTTAATGATACAGGAAACCTTGTTATAATCAAGGAATAAAAGTGTAATCACTGTCAATCATTGTATGTTTCAAAAG
Seq C2 exon
AGCTGGCCAGAAGATGCACTGCAGGCTGTGGCCTCTCGTTTCCTGGAAGACGTTGAAATGACAAACACTGCTCGTGAAGGCTGTATCAGCATGTGCAAGAGCTTCCACACATCCACCATCGATCTCTCTGCACATTTCCTTTCAGAGCTGCAGCGCTACAACTATGTCACACCAACCTCCTATTTGGAGCTTATCTCTATGTTCAAACACCTACTCCAGCGCAAAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165:ENSDART00000137131:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=WD(100=9.6),PF127802=AAA_8=PU(73.2=68.4)
A:
NA
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGCTGGCTCTCTTTAAC
R:
GGAAGCTCTTGCACATGCTGA
Band lengths:
256-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]