GgaINT0050156 @ galGal4
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9216177-9218156:-
Coord C1 exon
chr7:9217284-9218156
Coord A exon
chr7:9216407-9217283
Coord C2 exon
chr7:9216177-9216406
Length
877 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTTTATCCGTTTGTTATAGACG
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTCCTTAGAGTATATTATGATCGCTTGGTCGATAATCCTGATCGGGCTTGGCTTGTTGGATTTATCCAAGAAGTTGTGAATAAAGACTTGCATGAAGACTTTCATGAACTTTTTCAGGATCTGGACTCCAATAATGATGGCAGAGTGGAGGAAGATGACTTACGTACCTTAATGTTTTGTGATTTTCATGACCCTAAAAGAGACGACACTAAATATAGAGAGATCACTGATGCAGATCAGCTGAGATTAGTTGTGGAGAGTCACCTTGAAGAGTTTAATAACTTAAGCAAAAAGCCAATGCAGCTAGTCTTGTTCCAATTTGCTATAGAACATATTTGTAGAATTTCCCGTATTCTGAAACAGCCTCGTAGCCATGCCCTCCTTGTTGGTGTTGGAGGTAGTGGTCGACAGTCTCTTACTCGATTAGCAGCCCATATGGCTGAGTATAATCTTTTCCAGGTTGAAATAACTAAAAGTTATGGTATCAATGAATGGCACAAAGACTTAAAAGACATACTAAGAAAATCTACGGAAGCAGAAATGCAGGGAGTTTTCTTGTTCACCGACACACAGATAAAAAAAGAGTCATTCTTAGAAGACATTAACAACTTACTAAATGCAGGTGAAGTGCCAAACCTTTTTGCAGTAGATGAGAAACAAGAAATTTGTGAACAAATGCGTCAAATAGATCGCCAGAGGGACAGGACAAAACAAACTGATGGTAGTCCTATAGCTCTGTTTAACATGTTTGTTGATTGCTGCCGAAATCAGCTTCATATAGTATTGGCAATGAGTCCAATTGGAGATGCTTTCCGTAATCGCCTTCGTAAATTTCCTGCTCTTGTCAACTGCTGCACACTAGACTGGTTTCAG
Seq A exon
GTAAAAAAAAAAAGTATTTGTTTGGCTTGTTTTTCTAATGCAAATGCAGTAGAAACATGAGTTCAATCTTTTTTTTTTTTTTTTCCCCCCAAGTAATTCTGATTAAGATAGCAGTGAAAAATACCTTGGATTTTTTTAGTGTCATGCTTCAAATTGTTTATACAATTAGAATAAACCTGACTGTAATAAAAGCTAATATAGGAAGAATACAAAATCATCAAGAAAATAAATGTCTGATTGTGGTATAGGACTATAACTGAATGAACGTAGTACTGTAGACATAATAGATTTAAAAATGAATTGTTTTCTATTATTACAAGGGCTACCAGAATCTGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTGCAACTGTAATCTCTGTAAAAAATAAAAGAAAATGGCAAACAAACAGAAACACATCTTTTTGATGTGGACCACTACATTTTCCCTACTACACTGCAATAAGACTGTATTCTGCATGTGACATGCTCAAGTCCTTACAAGATTTAAAGAATATGTAATCCATAAAGTTTTAAAAGGTCCCGCTGTAACTTTAAAAGTTTTTTTTGAAGAAGAGTAACAATCTTACACCAATATGGACATATTGAAAATGTGAGATTTTCCTTTTAGTAAGTGTTTCCTCTAGATGAGATAAGACAGGAGGCTTGAGCTACAAGTCTAGGTATCTGAGTTATTTCTACTTATGTTGTTGTTCTCTTCTATAATGATAATGCAGGTCATTTCTTTATGTCTCAGTATCTTCATCTATGAAGTGGGATAAAGATTTTTGCTTTTGTTTGTAAAACGTTTTGATATTTATAAGTGTGAAGTACTGAGTAAGAGAACTGTTTATCCGTTTGTTATAG
Seq C2 exon
ACGTGGCCTGAAGATGCATTGGAAGCAGTTGCCTCTCGCTTCTTGGAAGATGTTGAAATGTCAGAAGAAACTCGAAGTGGGTGTATTGACATGTGTAAAAGCTTTCATACGTCTACCATTGTTTTATCTGATTTATACCATGCGGAGCTTCAAAGACACAACTATGTTACACCTACTTCGTACTTGGAATTGATCTCCACTTTTAAAACTCTGCTTGAAAAGAAGCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=WD(100=9.6),PF127802=AAA_8=PU(73.2=68.4)
A:
NA
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGATCGCCAGAGGGACAGG
R:
TGTCTTTGAAGCTCCGCATGG
Band lengths:
347-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]