BtaINT0050660 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84872071-84875124:-
Coord C1 exon
chr2:84874252-84875124
Coord A exon
chr2:84872301-84874251
Coord C2 exon
chr2:84872071-84872300
Length
1951 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
GCGTTTATCTTAACATTCAGTCC
3' ss Score
6.16
Exon sequences
Seq C1 exon
GTCCTGAGAGTGTATTATGATCGCCTTCTGGATAATGCAGACAGAAGTTGGCTTATCAGCTACATTCAAGAAATCTTAAAAACATATATGGAAGAAAATTTTCATGAGCTTTTTCAAAGTTTGGATTTTGATAATGATGGGATAGTGGAAGAAGATGATTTACGCAGCTTAATGTTCTGTGATTTCCACGATCCCAAGAGAGAGGATACCAACTACAGAGAAATTGCAGATGTGGATGCTCTCCGGGTGATAGCAGAAGCTCACCTAGAAGAATACAACAACATGAGCAAGAAAACAATGAACCTTGTCTTGTTCCGGTTTGCCATCGAGCACATCAGCAGAATTTCCAGGATCCTGAAACAGCCTCGCAGCCATGCTCTTCTGGTTGGTGTTGGAGGGAGTGGAAGGCAGTCCGTCACCAGATTAGCTGCCCACATGGCTGATTCTTCAGTATTCCAGGTTGAAATTTCCAAGGGCTATGGTAACTCTGAGTGGCATGAAGATTTAAAAGTGATCTTAAGAAAATGTGCTGAAGGGGAGATGCAGGGTGTTTTCCTATTTACAGATACTCAGATTAAAAAGGAGTCGTTTCTAGAAGATGTCAACAATCTGCTAAATGCTGGGGAGGTTCCAAATCTCTTTGCATTGGATGAGAAACAGGAGATATGTGATAAGATGCGTCAGATAGATCGCCAACGGGATAAAACCAAACAAACAGACGGAAGCCCCATAGCTCTTTTCAACATGTTTGTTGACCGCTGCCGCAACCAACTGCACGTTGTCCTTGCCATGAGTCCCATTGGAGATGCCTTTCGGATTCGTCTTAGAAAGTTCCCTGCTCTAGTAAACTGCTGTACCATTGACTGGTTTCAG
Seq A exon
GTATTGTCATGTAAATTTTAGATAGACTTCTAGAAATATTGATTCTCCATCATCAGCATGACTTATTTTAAAGTCCACCCCACCCCCCACAATTGTAGCTCAGCAGAACTTTCTGATCAATAATAATATATTTTATGAAATTAAAATTCAAAAATCATTATAACAGAAAAACCTTTTATTACTAGTGTATACAGTCATTGACATCAACTTATTGTAGAAAGTTTTAGGATAAAGTTGTATATCTGTCAGGTTCCTGACAGGGAAGAAAGAATACCTGGGAAGGCCTCACTGAGGAAAGTTGAATGAAGGAACTGTTCATGAAGGTGTAGGCAGGATTAAAGGAACTTGAGAGGGATGGTGAGGCAGGAAATGGTAGAGCATAGCAAGAAGATGTTACTACAGCTGGGTTTAAAGGGGCATAGGGAGGAAAATGTGTTACTGGAACTTGAAGCTGTGGAAGTAGGAAAGTCTGATGGGATCAGGAACCCCAAACCTAGAGTTCAGCTTCTGCTAGAAAGCAAGAGGGATAGAAATGCCTCTACCTCTCTCTTCTCCCACCCTCCAGTCTCTTTCCATTAGAAAGCCTGGCAGAAAGTCAAAAGGAAGAAACTCCCAGTGACCACTTTTTCTAATAAATTTCAGTATCAGAAGTACAGAACATACAAGGGCATAGGGTAGGAAGTTTGTGAGCTGTGGCAGAGATCCTGTGAGGGAGATCTAACACATAGGAATTTTTGACCTTGGGGAATTTACATAACCCCTTTGTCCCTTCAATTTCTGCTAAGATTTCATGAAAAAACATATTTATTGAACCCTTGCTTTGTAGCAGATCTTATTCTAAAGCTGGAGATGAGTCAGAAAATGAAATAGACTAGGCTTCTGCTTTTCTTGAGTTTACTTACATGCTTGCAAATTAGTGAAAAATAATTCCATCATACAGGGTAGCATAAATGGAGTAAAAGGTTTTCTGAATCAGTGACCTTTAGGAGGAAACATAAAGGACAAAAAGTGCCAGTACTGAGAGGATCTGGTCAGAGACAAGAAATTAGTGAAGACAAGGAGCTTCATAGGAAGATTGAATAGAGTGAGAAAAACTCAGGACAAGTACCTGAGGGGGAAATTACATAGAGTGGGGTTGGAAAGGTGGAAAGGGCCAGATCAAGTAGAGATTTACAGATTAGTTTTGGATTTCGTTTTGAATATGTTGCGAAGTCTTCAAACAGTTGTAAATTGAGAGTGTGAAATTAGCTGTTAATAATCTGCATTTGATGAGATCACTCTGGCAACTCCACAGAGCACACAAGCAGGGTGGACAGTTAGGACACTGTTGAAATATTCCAGAAAAACGATAACAGTTGAACTGCGATGGCGATTATAGGTGTAGAAGGAAAAGAGTTGGAAGCTATTTTAGGGATGGTGCCCATAGAACTGGATTTTGAGATGGATATAGAATTGAGGTGTTTACTAAGTTGGGAAGGTCACAACCATTTGGGGGGAGATATGACCATGATTCAGACTTGTTGAGTTTGAGGCAATTATGAAAGAAATCAAGGAGGCAGTTATTCATCAACTTCTGGAGTTTAGGGTAGAGGATAGTAACATTTACCTCGGAAATTTGGGGAGAAATAAATGAGATAATAATAGTAGAATGTGCAAAAAGATACACATTCTATAAATTTGGTTCCTTTTTTCTTCCTTTCTCCTGCAATACTCATGTACAATTTCTCTAACTCCTGAACAAACCAGAAAGAGTTAACAACATTACATGCATTAGCTACTGGCTCCCTGTCCTAAGCAGTCAAGTACTTGGGGGAAGTTTCTCCTGAGATTCTGTCCCACCCCATTCCTCATCCTTTCCTCTGCATTTCCACCATCTGTGAAGGACCTCAGTAGTAACAGACTCCTGTCAGTAACTTCGATGATATGCTAAAGCGTTTATCTTAACATTCAG
Seq C2 exon
TCCTGGCCTGAAGACGCACTACAGGCAGTTGCCTCCCGCTTCCTGGAAGACATTGAAATGTCAGAGGAAATACGAGATGGCTGCATTGAGATGTGTAAAAGCTTCCACACTTCTACTATAGATTTATCCACATCCTTCTATGTTGAACTTCAAAGATACAATTATGTGACACCTACCTCTTATCTTGAATTAATCTCTACCTTCAAACTGTTGTTGGAAAAGAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784:ENSBTAT00000038364:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(73.2=68.4)
A:
NA
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAATGCTGGGGAGGTTCC
R:
CATCTCAATGCAGCCATCTCGT
Band lengths:
355-2306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]