RnoINT0051279 @ rn6
Intron Retention
Gene
ENSRNOG00000039969 | Dsc2
Description
desmocollin 2 [Source:RGD Symbol;Acc:1309426]
Coordinates
chr18:11834046-11837553:-
Coord C1 exon
chr18:11837411-11837553
Coord A exon
chr18:11834271-11837410
Coord C2 exon
chr18:11834046-11834270
Length
3140 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTCACTGCTCTATGTCTAGACG
3' ss Score
5.95
Exon sequences
Seq C1 exon
GTACAGGAAGTTAAGTGACCCAAAAGGATGGATCACTGTTAATGAAGATTCAGGATCAATCACCATTTTCCGAACTCTGGATCGGGAGGCTGAGACCATCAGAAACGGCATCTACAATATTACAGTCCTTGCATTAGATGCAG
Seq A exon
GTAAGAAATCTGTTTTTAAGACACCTACCTGCATCTTCGATTGTATGGTTCCCCACTTTTAAAGTAAATTACATATTCTTTATTTTAATCTCATGTCACATGAGATCGAACCCAGGCCCTTCAGATGCAACACAAAACACCCTGCTAACAAGCCCTGCCCTTAGCCCAACAAAATACTCATTCATCTTTGAGACAAGAGCTCATTGTGCAGCTCTGGCTACTTGGGAGCTCTCTATGTAGCCATATTGGCCTTGAACGCATAGAGATCTGTCTTCATCTGTCTCCAAGTTCTGAGGTTAAAGGCCTTGGCCATCATGTCCAGCCTACTGAAATGTAGTTTGTTTGTTTGTTTTTCCCACCCTCCTGAAATGTAGTTTTAAAACTGGCTTCATATACTCAATTTATTTTCCCTCAGCATAACATATAATTAGAAGTGTGCTGTCATCTATTAACCCGTCAGCTAACAGTATCTTCAGTGTTAGCTGTAACTATAAAATAACGTCATCGAAGATGGGGCCAATGAGATGGCTTAGCTGGTTAAGGTACTTGCTACCAAACCTGAAGACCTGAGCTTGTCTCAGATGCCAGGAGAGAACAGACTTCCGAAAGCTTTTTTTTTGACTGCTGTTGTCACTCATAATAATTAAACACATTTCATAAATATTAAAGAAAAACCAATTTGGTCTAAGAAACAAAGTTACAATATATTAATGATAGACCTTAAAAAGTGGGAAATCTACTTTAGAAAGATGTGTTAATTTATCTTGCGACATTCAGGATTGTCCATAAGAAGGAGGAGGTATTTAGTCACATAGTACACTTCTAGAAAACATAACACTTTATAGGACACTAATAGTATTAAGCACATTGTATAAAAGGAATCAGTCACAGGTAATAGTGTGTTGTAAAATGAGAGAGTCCAACTGTGAGTTCACACAGCCCACTTTGTTTCTGTTGCTATGAAGAAATGACCTCATGCAAAGCACCATGGGAGAGAAAGGGACTTTTTGACTCACGAGCCCGGGTAGTAGCCCATCATTCCAGACAAGAGAGGGCAGGAACCTGAAGCAGGTAGTCACAGCCACAGTGAAGAGCAGGAAGCATGAGAGCGTGCACACCTAGTGCTTGGCGAGCTCACTCAACTTCTCTGCGGCCCAGGGCTCAACATCCAGGGCTGATGCCATTACCCTGGCCGGGTATATTCACTTCAGTTAAGACAATCAGGACAACCCCCTCTGCACAGACATGTCCACAGGCCAATGTGATTCCACTCCTGACAAGCTGACAATTACACCATATAGAACCTAAAATATAAAATTATGTTTTGTGTATCTTGAAAATTCAGGAAAATATGAGCACAGTGATTGTGTATATAAGGCCCATTTAGTGTGTAAAGTGTAATTCTGTTATAAGATATATTTGCTTGTTTGTGGTGCGTACTGGCAATTACAGTACTTGGATATTGGAGACAGTAGGATGAATTCAAGGCCAGCGTCAGTTACACAGTAAGTTTGAGGCTAACCTGGGCTACCTGAAAGGCTTTCAAACAGAGCTTGAATAACAAAAGTTATAATTGAATTTAGTGTGCCTGTAAACTAAATATGCAATTATAAGAAACATAACTCATTATGCTCTAACCTGCAAAATTAAACCGTGTAAGTGATTTTAGAGGATTTAGATTTAGATATTGCAAATCACTCTTGAGTTAACTCAAACAACCTCAGGAGTGAGTCTCCATAAAGATTGTTTCTTTTGTTGTACCTCTTCTAGACTGTATTAGATGAATTTTACTGTTTGATTTTTTACAGAGATTTGAGCTGTGATTTCATTTCTGTTTAACCTTCTTTGTGTCCTTGAAGATCTTACATGTGCTTGTTTCAAAGCTCTCATGTAGAGTGAATTCATCTTTCACTGGTGATTGTTTAGGCTAACACTACTCATGGGGACCTATCCTAGCATTAACAGGGGGCATCTGATCAGCTCAACCTTTGGATTCTCCCCTCCTACCTTACTCTGTCTTAGTTGGAAGGCAGTTTTGGAGTGAGCTGCACACACATTTCTGGTCTGTGGTTCAGACTAGTTCTTAACCTGATTTCCTGGTGTGCCCAGCCTCTGATGACTCTAGAATTACCAAGATCCAGCCCCCGTGGCACAGGGGCCTTGGCTAAAGTTTTGGTTGCCAGGTAAGCGTAGTTTCCATTTGCTTAGGTTGGCAGCTGCATGTAAGACATTGCCTCAAGCTCTGGGTGGTGCAGTTTTTGTTTTTCCTTTTCCTCCATCTGCAGTGTCCAAATCCTCCTAAATATGTAGAAAGAACAAATGGTTTAGAGAAGGGACTCCTAGTTTCGTGCTTGGCTTTAGACTACATAACCTCCTTCCCCTGTGATTGCTCCGTCTTTGTGTGCCCAGACTTCCTGATGCGGTGCCTTGTATAGAGTCATCAGAAAGACTTATATATGTGAATGGCAGGTTAATTACAGAAGTTACACCCACAGTCCTAAGTTCCGTTTACTTAATATGTAGATGATAGACTATTTGTGAGGCTACACCCATAGCGATAGTTTCTACATTTGGGAATGTCTCTCTACCCTCTGAGCATCTCCTGGGACCATTCCTGGTTAAGTTTTAAATACATATATTATTCAACTTCCTTGTTCTAAAACCTAAGCATTCTCTTCATGTATGAAAGCTCCAAGTTCATACTGGAGTGTAATCCTGATGAGGCAGCGAACGGTCTCAGTCTAGTACACAAGGGTTAGTAGCCCTTGCCTGTGTCAGCCCTCACCTTCTGCTTTCTCCATTTTCTCCACATCATAGTCAAGCTTAGTGTGTGCGGTCCTTCTATACTTTCTTTTTGTCTCTTCAAAAATCAACTAAAACTTCTCTGTCGACATTTTTCATACCTAGTGACCATGATCTAGTAAACAGATGAAAATATCTAAGTAGCAGTTATCCTACGTTATCACTTGGAAGCAGTAAGATTTTTCTTTAGTGCTCCCGGTGTTGTTGCTCATGGCTGTATTTGTGGCAGTAACATGCATTGCAAGTGATTATTAAATATAGATATTAATTTTCAATGTAGGATTTCCTAGCAAAAAATAATGAATAAAAAAATTGTGTTCTCACTGCTCTATGTCTAG
Seq C2 exon
ACGGGAGAAGCTGTACGGGAACTCTGGGAATCTTACTTGAAGATGTGAATGACAACGGCCCATTCATACCCAAGCAGACAGTGGTGATATGCAGGGCTACCATGTCCTCTGCTGAAATTGTTGCGGTTGACCCTGATGAGCCAGCAAATGGTCCACCATTTGATTTTAGTTTGGAGAGTTCTGATTCAGAAGTACGGAGGAGGTGGAAGTTGACAAGAATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039969:ENSRNOT00000061417:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(51.6=100)
A:
NA
C2:
PF0002812=Cadherin=PD(14.0=17.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]