RnoINT0053551 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:1980434-1981444:-
Coord C1 exon
chr3:1981290-1981444
Coord A exon
chr3:1980602-1981289
Coord C2 exon
chr3:1980434-1980601
Length
688 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
GCTTACATTTTCCTTTTTAGCCT
3' ss Score
9.09
Exon sequences
Seq C1 exon
GAGGAGAACATTTGTCTGCACTGGGCAGCATTTTCAGGCTGTGTGGACATAGCTGAAATCCTCCTGGCTGCCAAGTGTGACCTGCATGCTGTGAATATCCACGGAGACTCACCCCTGCACATCGCAGCCAGGGAGAATCGCTACGACTGTGTTGT
Seq A exon
GTGAGTGTGGCCCTGTGCCAGGATAACTCTTGCTGCCAGGCTGCTAGAATGGCTGCTGAATGGCTGTGTCCACACTCTGCCTAGAGCTGATGCAATAGAGGTGGAGAAGAACCTTTACCAATTAATATCTCAGACCAGCTATGGTACCCTTTAGGCTCATAGTTGTCCTAGCAAACAGAAAGAAACAGCAGTGCAGGGACAGTTCCAGGAGGAACTAGTGCGGTATTATTGGCTCTTCCTCTCAGGTTGAAATGGTGGCTGTTTAGGGTGCTTGGAAGCAGGATTTACGTGCTGGCAATGGCATATATGGTGTACCGTGCCTGCCATGTTCCTTTGGAAGGAGAAGGAGGGCAGTGACTGCTCTAAGGAGCAGTCAGAAAGGGGAAATGAAGTGGCTTTGCAGCCCGCTAGCATAGGTATGGCGTCCCTTCTTCCCTCATCAGGCAGACGGGCTGGGCTGCATACCCCAGACCCGCTTCTCCACATCATTTCCTTTATCCTTAAGGGCAAGTTAGAAAGTTAACCAACCATCTTAGCGCCTGCACGCATGCTCAGGTGAGGAGACTGATGCCTCATTGTAAGTTGGGTACTCCATGCTAGAAGAAGCTATAGAAGTCATTTATATGTCTTAACTGTATCTTCTAAATTCAGACCTGGATGTTTTGTTGGCTTACATTTTCCTTTTTAG
Seq C2 exon
CCTCTTTCTTTCTCGGGATTCAGATGTTACTTTGAAAAACAAGGAAGGAGAGACTCCCTTGCAGTGTGCAAGCCTCAATTCCCAGGTGTGGAGTGCACTGCAGATGAGCAAGGCACTTCAGGACTCAGCCCCTGACAAGCCCGTTGCTGTTGAGAAGACGGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(51.1=88.5)
A:
NA
C2:
PF127962=Ank_2=PD(47.8=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATTTGTCTGCACTGGGC
R:
CTGCTCACCGTCTTCTCAACA
Band lengths:
318-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]