DreINT0061763 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28898156-28899259:-
Coord C1 exon
chr5:28899105-28899259
Coord A exon
chr5:28898324-28899104
Coord C2 exon
chr5:28898156-28898323
Length
781 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATGGAAATGCTCTTCTCTAGGTT
3' ss Score
6.03
Exon sequences
Seq C1 exon
GAGGAGAATTTGTGCCTCCACTGGGCTGCTTTCTCTGGCTGTGATGAAATCGCTCAGCTGCTGCTGGACCACAGATCTGACCTGCACGCGGTGAACGTCCATGGAGACACTCCTCTTCACATCGCTGTCAGACAGAACCAACTGGACTGCGTCAT
Seq A exon
GTAAGTACAAGAACAGCTCACTTATTTGTTAAATTGAATGTCTGAGATTTTATTATATTTAAGGTGGATCTGGCTTAGATGAAGGGTTTTCAAATTGGGATCCAGAAAAATGTTTGGACAAAATGCATGAAATGTTGTCAAAAAATTATTTAAAGCAAAATTTAAATAAATAAATAAGCAAAGAATATGATAGCGAATCCATCAAATAACATTTCATAAAAATAAATAAAATGTTATTTGATTTATTCACTATCATATTCTTTGTTTATTTATTCACTTAAATCTGATTCATGCATTTTGTCCAAACATTTTACATTAGTATAAAAAAATTCAAACATAAATTGATTAAAAAATATATTTAAAAAATGCAAACATGTAAAACAAACTACAGAATATTGAATGGTATAAAAATATTTAATAATTAAATAATTAAGTAAAATTATAAATTGAGTCTTAATACAAGAATCTGTACAGATGCATTTTATATTTAAGATTGTAGTTCCTCATGCAATAATATTTCAGCAATTTTTTATCACCTATGATGTCAGTAAATGATTGATTGGCATGGAGGTAAATAAATACTGAAACATTTAAAACATACATAAGCTTATTTTAATTTTAAACACTTCTAATTTTAGGTTACTTTTAAATTAAAACTGTTATGATTTAGCTCAGTAGTAGCTTTTCCTCTTCACTAGCCCCCTCAGACATGTATAAACCCCAATTTGAAAATCCCTGAATTAATCTGATGTTCATTTTTCATGGAAATGCTCTTCTCTAG
Seq C2 exon
GTTGTTTCTGTCTCGAGGAGCGGATGTAAACCTGAAGAACAGAGATGGCGAAACTCCTTTGGGCTGCTGTAATATAAACTCCAAAATGTGGACAATCCTGAACACCAATAAGAAGCTGACTGATGCGAGGAGAGGACGAGAAAGCCTGAGAGAGAGACTCCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(54.1=88.5)
A:
NA
C2:
PF127962=Ank_2=PD(44.7=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTTGTGCCTCCACTGGG
R:
TGCAGAGGAGTCTCTCTCTCA
Band lengths:
318-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]