RnoINT0068784 @ rn6
Intron Retention
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30212201-30214276:+
Coord C1 exon
chr12:30212201-30212377
Coord A exon
chr12:30212378-30214140
Coord C2 exon
chr12:30214141-30214276
Length
1763 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
CTCTGTGCGTTAAATCCCAGGAT
3' ss Score
6.13
Exon sequences
Seq C1 exon
GCCCCGTACGTGGACGTGATTTGTGTGAACAGTTACTTATCCTGGTATCATGACTACGGGCATCTGGAGGTGATTCAGCTGCAGCTGACTAGCCAGTTTGAGAACTGGTATAAGATGTACCAGAAGCCAATTATCCAGAGCGAGTATGGAGCAGACGCCGTCTCGGGGCTTCATGAG
Seq A exon
GTAAACAGTTCATTGTTATAACGACGGCCATGTTACTTAGTGACTTATCTCTTTGTGTTTTCCCTGCCAGTGACCCTGACTCAGCTCTCAGGCACCTTCCTAAGCCTACACACTGTGGCCCCTGCATGCAGGCCTCTGTTTGGCTCATGTGCATCCCAGAGACAGCCCATTATTGGCTGTGTTTCCACACAGCGCCCCCCCCCCCCACTATCCGCATTTTTTGGTTCTGTTTCTCTTTTCCCCTAAGGTCTCTATTTGATGCCCAGACTGGCCTCAGATTCACGCTCTCCCTTAACCTTGAGTGCTGCTGACATGACAGGTGTCCCTCCGTGCCTAGCCCAATAGCTAAGAATAAAATTCTTAGCCTGTGAGCCGGAGAGCTGGCTCAGTGGTTAATACTTGCTGCCCTTCCAGTGGACCTCAGTCTGGTTCCCAGCGCCCACACTGGGTACTTTAAAACTCCAGTACCAGAGGCTCTAATGGCCTCTTTCGGCATCCACGGGTACCTACATGGCAGTTGGGCACACAGACACACAATTTAAAAAATTAAAAACACTGTACATCCTACCCCAGCACTGTATAGACCAGCCATGGTAATCCATACCTATAATCTAGTGCTGGGGAGTGAGGGGCCAATTCAAGGCTAGTCTAGGATACAGAAAACCCTGTCGAAACAAAAAATTCTTCCCACGTCCAGACAGATGTTAGAGGATCCTTGACAAGGATGGAAATATCTCTGTCTGCCCCCCACCTCCGGGGATTGGTAGCCACCAGCCGAGAAACAGCCACAGGGGATTTGAAACGTGGGTGGAATGACTGAATTGATTTAGTGTCATCCAAATTCCGATAGCCACATGTGGCTTGCAACTACTGTATTAGTGTGGCTATGGAACTATTCCCATTAAAAAATATGATGGGCAAAGTGGCCTAGGTCTGTACTACCACTTGGGCGGAGGCGGTTGAGTTTCAGGGCAGCCTGGGGTACGTGAGAGGACTCTCATAAAGCACTTGCTACACACGTGCAATGAGCTGAAACAGCAAGAGACCCCCGACTTGATTAAGGTTGCATAAAACTGAGGACCACCTGATTTCTAACACAGGGGAATGAAAATAGAGGTAACAAAAAACACACAGTTACTATCTAAGGTTTTTACTTTTTCGTTTCGTTTTGTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCCGGCACTTGATCTGTACACCAGGCTGGCCTCGAGCTCACAGAAATCCCCCTCCTCTGCCTCTTGAGTGCTGGGATTAAAGATGTATGTCACCACCACCACCCTATAGGTTTTTACACTTTCAAAGATTGTTTTTAAAACAGGGTCTCACAGTGTAGCCCCAGCTGGCCTTGAACTCTTGATCCTTCTTGCGTTGGCCTCTTGAGTGAGTTGTGGGATTAAAGACATGGGCCACCTTGATGATGGTGTTTTGTTTTGCTCCCCCCTCTCCCCCAAAACAAGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGTTCTGTAGATCAGGCTGGCTTCAAACTCAGAGATCCTCCTGCCTCTCCAGTGTCGGGATCAATGGCATGTGCCACCACTGCCAGGTAGCCTTTAAAGTTTTTTTCAGACCCCAGGGTCTCTGAGCCAGCATCAGTTAAGTCCTGCGGTTAGTACAGCCCTACATCAGCTCTTTTAGCTGTGGTCAAGTGGATCTCACGCCAGGCCCAACTCTGACATTCTCTGTGCGTTAAATCCCAG
Seq C2 exon
GATCCACCTCGCATGTTCAGTGAGGAGTACCAGACAGCTCTCCTGGAGAATTATCATTTGATCCTGGATGAGAAACGAAAAGAATATGTCATCGGAGAGCTCATCTGGAATTTTGCTGACTTCATGACGAACCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913:ENSRNOT00000001215:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.1=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=FE(14.9=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGACGTGATTTGTGTGAAC
R:
TGGTTCGTCATGAAGTCAGCA
Band lengths:
303-2066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]