RnoINT0070973 @ rn6
Intron Retention
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113576380-113576917:-
Coord C1 exon
chr4:113576818-113576917
Coord A exon
chr4:113576564-113576817
Coord C2 exon
chr4:113576380-113576563
Length
254 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGGTTTCTTCCACTGGCCAGGCA
3' ss Score
4.14
Exon sequences
Seq C1 exon
GACTTTGACATTGACATTGTGGCCGTGGTGAATGACACAGTTGGGACCATGATGACTTGTGGCTATGATGATCAGAACTGCGAGATTGGTCTCATTGTGG
Seq A exon
GTGAGTGAGCTGGTGTGAGGACCAGTGAGCTGATCGTTAGCTGGGGTATTTTCTCCTCCTACTGTGTGTGGTGCCAAGCCAGGACTTATGGAGTTAAGCAGCTGTACAAGAAAGAGGCCTGGCTTGGTGTTGTGCTGTCCCCGGAGGCTGCTGTGATTCCTCACGGCCTCTGGGAAGACTTCTAAAGTGGTGAAGAGGGAGGCGGGTAAGACAAGAGCACGTGTAGGCACTGACTGGTTTCTTCCACTGGCCAG
Seq C2 exon
GCACTGGCAGCAACGCCTGCTACATGGAGGAAATGCGTCATATTGACATGGTGGAGGGAGATGAGGGGCGCATGTGCATCAACATGGAGTGGGGAGCCTTTGGGGACGACGGTACACTCAATGACATCCGAACCGAGTTTGACCGAGAGATCGACATGGGCTCGCTGAACCCTGGGAAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116:ENSRNOT00000008813:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(11.1=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTGACATTGACATTGTGGCC
R:
AGCTGCTTCCCAGGGTTCAG
Band lengths:
284-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]