BtaINT0072319 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9742395-9743017:-
Coord C1 exon
chr11:9742918-9743017
Coord A exon
chr11:9742579-9742917
Coord C2 exon
chr11:9742395-9742578
Length
339 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
CATTCTCTTGTTTTGTCCAGGCA
3' ss Score
7.91
Exon sequences
Seq C1 exon
GACTTTGATATTGATATTGTGGCTGTAGTGAATGATACCGTTGGGACCATGATGACCTGTGGCTATGATGACCAGAACTGTGAGATTGGTCTCATTGTGG
Seq A exon
GTACGTGAACACTGCGTGTGAGCATTGTGGGTGTGTGAACAGTGCTGGCCAATGGAGTGCGGGTGTGGGCTGCAAAGAGAGGAGGAGTCCATGGCCTGGATCTTCCTTTGTACTTCCTGTTAGAAGATAATGGTATGGTCACTTTTGAGGGCTGAGCCAGGACTTGAGGAGTTGTGGGTGGTAGTGGGTTGGACCATGTCGAGATGCCCCAGGAGCCTCCAGGGAGGAATCCCAGTCACACTGAGCGGTCTGAGGACAGAGTTTTAAGAGGGAGATGGGGGCTGGGGGCTGGGGGAGGACAGTGTGAGTGGGTGCTGAGCATTCTCTTGTTTTGTCCAG
Seq C2 exon
GCACAGGCAGCAATGCTTGCTACATGGAAGAGATGCGCCACATCGACACGGTGGAGGGCGACGAGGGCCGGATGTGTATCAATATGGAGTGGGGGGCCTTTGGGGATGACGGCGCGCTTGATGACATCCGTACGGAGTTTGATCAGGAGATCGACATGGGCTCTCTGAACCCCGGGAAGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108:ENSBTAT00000060994:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.3=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATTGATATTGTGGCTGTAGTGA
R:
GTTGCTTCCCGGGGTTCAG
Band lengths:
278-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development