HsaINT0076361 @ hg38
Intron Retention
Gene
ENSG00000156515 | HK1
Description
hexokinase 1 [Source:HGNC Symbol;Acc:HGNC:4922]
Coordinates
chr10:69369237-69369624:+
Coord C1 exon
chr10:69369237-69369336
Coord A exon
chr10:69369337-69369440
Coord C2 exon
chr10:69369441-69369624
Length
104 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATG
5' ss Score
6.42
3' ss Seq
TCTGATCTTGTCCTGCCCAGGCA
3' ss Score
7.96
Exon sequences
Seq C1 exon
GACTATGATGCCAACATCGTAGCTGTGGTGAATGACACAGTGGGCACCATGATGACCTGTGGCTATGACGACCAGCACTGTGAAGTCGGCCTGATCATCG
Seq A exon
GTAATGCATTCCCCTTTGCCCATCCATTTGTTCGGCCCATCTTTCCAGGTGGCTCTGCACCCTCCCCGTTGTGTGGTCATAGCTTCTGATCTTGTCCTGCCCAG
Seq C2 exon
GCACTGGCACCAATGCTTGCTACATGGAGGAACTGAGGCACATTGATCTGGTGGAAGGAGACGAGGGGAGGATGTGTATCAATACAGAATGGGGAGCCTTTGGAGACGATGGATCATTAGAAGACATCCGGACAGAGTTTGACAGGGAGATAGACCGGGGATCCCTCAACCCTGGAAAACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156515:ENST00000359426:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(11.6=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(87.0=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAACATCGTAGCTGTGG
R:
GATCCCCGGTCTATCTCCCTG
Band lengths:
256-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development