MmuINT0077981 @ mm10
Intron Retention
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:62295703-62296095:-
Coord C1 exon
chr10:62295996-62296095
Coord A exon
chr10:62295887-62295995
Coord C2 exon
chr10:62295703-62295886
Length
109 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGG
5' ss Score
4.44
3' ss Seq
TCCCACATTGTCTCTCCCAGGCA
3' ss Score
8.77
Exon sequences
Seq C1 exon
GACTATGACGCTAACATTGTAGCTGTGGTGAATGACACAGTGGGGACCATGATGACCTGCGGCTACGATGACCAACAGTGTGAAGTCGGCCTGATCATTG
Seq A exon
GTAGGGTGTCCCGCCACCCAGTTTAACCCCGAGCTTCTTGCTTTGCTCAGCCCGTCAGGTGCCCTTCCTTGCCTCGTGGGGTCACAGCTTCCCACATTGTCTCTCCCAG
Seq C2 exon
GCACTGGCACCAATGCTTGCTACATGGAGGAACTGCGACACATCGACCTGGTGGAAGGCGATGAGGGGAGGATGTGTATTAACACGGAATGGGGAGCCTTTGGGGATGATGGGTCCCTGGAAGACATTCGAACAGAGTTTGACAGAGAGTTAGACCGGGGATCCCTCAACCCTGGGAAACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012:ENSMUST00000116238:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.3=67.6),PF0372711=Hexokinase_2=PU(47.1=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(46.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTAACATTGTAGCTGTGGT
R:
GGGATCCCCGGTCTAACTCTC
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types