BtaINT0072302 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25893807-25894202:+
Coord C1 exon
chr28:25893807-25893906
Coord A exon
chr28:25893907-25894018
Coord C2 exon
chr28:25894019-25894202
Length
112 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACG
5' ss Score
4.39
3' ss Seq
ATCTCGTCTCCCTCGTCCAGGTA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GACTATGATGCCAACATTGTGGCTGTGGTGAACGACACGGTGGGGACCATGATGACCTGTGGCTACGACGACCAGCAGTGTGAAGTCGGCCTCATCATTG
Seq A exon
GTAACGCCCACCCTGTCCTTGTCCCTTCTGAGGCTGGTGTTTCCAGCTGGCGCTGCCGTCTCTCTCGTGACGTGGTGTGGTCACAGCTGCTGATCTCGTCTCCCTCGTCCAG
Seq C2 exon
GTACCGGCACCAACGCGTGCTACATGGAGGAGCTGAGACACATCGACCTGGTGGAGGGCGACGAGGGGAGGATGTGCGTCAACACCGAGTGGGGGGCCTTTGGGGACGACGGGGCCCTGGAGGACATCCGCACCGAGTTCGACCGGGAGATAGACCGGGGGTCGCTCAACCCCGGGAAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380:ENSBTAT00000016432:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.2=67.6),PF0372711=Hexokinase_2=PU(3.3=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCCAACATTGTGGCTGT
R:
TCTATCTCCCGGTCGAACTCG
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]