RnoINT0070955 @ rn6
Intron Retention
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31937153-31937543:-
Coord C1 exon
chr20:31937444-31937543
Coord A exon
chr20:31937337-31937443
Coord C2 exon
chr20:31937153-31937336
Length
107 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGG
5' ss Score
4.44
3' ss Seq
TCCCACGTTGTGTCTCCCAGGCA
3' ss Score
8.71
Exon sequences
Seq C1 exon
GACTATGATGCTAACATTGTCGCCGTGGTGAATGACACAGTAGGGACCATGATGACCTGCGGTTATGATGACCAACAGTGTGAAGTCGGCCTGATCATTG
Seq A exon
GTAGGGTGTCCCGCCCCCACTTGCTCCCCAGCTCCTTGCTTTGCTCAGCCCATATGGTGCCCTTCCTCGCCTTGTGTGGTCACAGCTTCCCACGTTGTGTCTCCCAG
Seq C2 exon
GCACAGGCACCAATGCTTGCTACATGGAGGAACTGCGACACATCGACCTGGTGGAAGGCGACGAGGGGAGGATGTGTATTAACACGGAATGGGGAGCCTTTGGGGATGATGGGTCCCTGGAAGACATCCGAACCGAGTTTGACAGAGAGTTAGACCGTGGATCTCTCAACCCTGGGAAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891:ENSRNOT00000072429:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.4=67.6),PF0372711=Hexokinase_2=PU(10.1=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(77.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGTCGCCGTGGTGAATGA
R:
GGGTTGAGAGATCCACGGTCT
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]