RnoINT0071394 @ rn6
Intron Retention
Gene
ENSRNOG00000011175 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:RGD Symbol;Acc:1310403]
Coordinates
chr4:81238543-81239379:-
Coord C1 exon
chr4:81239317-81239379
Coord A exon
chr4:81238663-81239316
Coord C2 exon
chr4:81238543-81238662
Length
654 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
AAAGGCTTATTTTATAATAGGTG
3' ss Score
4.94
Exon sequences
Seq C1 exon
ATGGATATGGAAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAG
Seq A exon
GTTAGTGTTCATTGATTATGATTTCTGTATCTTAATACGCATAATAACATTGAATTTGGTGTTTGGTTTATATATCACTTTTGCCTATCAAAGTGCTTAGAGGTAGTGGTCAATTGGCTTTTAAAGATGAGTTTTGTAACTAAGCAAAGTTGGCTTTAACCTACTTTACAGTGTAAAATCATAAGTTTGAGTTTCCATTTCATAAAAAACTAATTGAACCTAGATAGGGAGTTCTGTGCTTTGTAGAAAAGCTAGAATATTGGAATTATAAGACAATGCATTTATGTAATAAGTTCTTAATATACAGGGGTATTATCTTTGTAGTCCTGGGTTTCATGTAGACCAGGCGGGCTTCACATGCAGGTATGACTGCCAAGACTTTATAAATTTTGCTAGTATGCTGCCCTTATTTCTTCCTCAAAACTATAAAGCATAAGAATTTGAAATACCGATTCAAAGGAGTTTTGTGGGATTAAAGGTTACTCTAAGTTGCTTCATGTTTACCCAAGATTAGATATTTATCTTGCCTTTGAGTCTATTCTAGAATAGACTATATAAAATATGTTTTTGAAAAACCAGAAATGAGTGTAATAAAGACAATTCAAATGGAATTGAATAATTTAAGCAATTACTTAAAGGCTTATTTTATAATAG
Seq C2 exon
GTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011175:ENSRNOT00000015152:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATGGAAGTGGACGTGGA
R:
CTCCTCCATAGTTGTCATAACCACC
Band lengths:
182-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]