MmuINT0078447 @ mm10
Intron Retention
Gene
ENSMUSG00000004980 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
Coordinates
chr6:51464089-51465241:-
Coord C1 exon
chr6:51465179-51465241
Coord A exon
chr6:51464212-51465178
Coord C2 exon
chr6:51464089-51464211
Length
967 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
GTATTCCAATTCTTTTACAGGAA
3' ss Score
10.04
Exon sequences
Seq C1 exon
ATGGATACGGAAGTGGACGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAG
Seq A exon
GTTAGTTTTAATTAAATTTTGATTTATGTATCTTGATATATTTAATAACATTGCATTTGGTGCTTGGTTAAATTTGTATATCACTTGTTTTGCCTAACAAAGTGGTTATTTGGCTTTGGAAGGTGATTGTTTTTTTTGAGTTATTAACAAATTTGCCTAACTACTGTACCAGTGTAAAATTGTGAGTTTCATCTCATAAAACTTAAAATTATTTAGGTGAGGAGTTCCTGTGCATTGTAGAAAAAAAAGCTAGAATATTGGAATTGGAATATGGTGTGATATGGGATAATACAAGTTACCAATATTAGGAGCTCTCTCTTAGATAGTCCTGGGTTTCATGTAGTCCATATTGGCTTTAAATGCAGGTCTGCCTGCCAGAGTTTCTTCCTCAAAACTACAAAGCATATGAATTTGAAATACTTAGCAATTCAAAGGAGAGTTCTGGGATCTTAAGTTGCTTTATGTGTTTACCCAAGGATAGGTATTTACTTTGCCTTGGAGTCTATTCTAGAATAGACTTTATATAACAAATATCTTATGTGTTTTGAAAAACCAGAAATGAGTGTAATAGAGACAATTCAAATGGAATTGAAAAATTTAAGCAATTACTTAAAGGCTTATTTTATAATAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGTAATAAATTCATCTACAACCTTTATGTTGGAATTTGGATTAGAATTAATGACATTTATTTTACTGTCGATTAGATAGATTTCTTAAATTGTAGGATTATAGATAGGTATTGTGTACTTTTGTTTTGGAAAATATTTGTCTTAAAAATTAAACATTAGTTTGGCTTCGATGCTTGTATTTTTCAGAGGTTTAGCTGGTATTCCAATTCTTTTACAG
Seq C2 exon
GAAATTATGGAAGTGGAAGTTACAATGATTTTGGAAATTATAACCAGCAGCCTTCTAACTATGGTCCAATGAAGAGTGGAAACTTTGGGGGTAGCAGGAACATGGGAGGACCATATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004980:ENSMUST00000069949:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=PU(94.7=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types