RnoINT0071395 @ rn6
Intron Retention
Gene
ENSRNOG00000011175 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:RGD Symbol;Acc:1310403]
Coordinates
chr4:81238219-81238662:-
Coord C1 exon
chr4:81238543-81238662
Coord A exon
chr4:81238342-81238542
Coord C2 exon
chr4:81238219-81238341
Length
201 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
GTATTTCAATTCTTTTACAGGAA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAG
Seq A exon
GTAATAAATTCATCTACAACCTTTATGTTGGAATTTGGATTAGAATTAATGACATTTATTTTATTGTCGATTAGATACTTTAAATTGTAGGATTGTAGTTAGGTATTGTGTACTTTTATGTCTTAGAGAAAATTTGTATTCAGAAAGTTTTTCTTCAATGCTTGTATTCAGAGGTTAGCTGGTATTTCAATTCTTTTACAG
Seq C2 exon
GAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGAGGACCATATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011175:ENSRNOT00000015152:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.794
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=WD(100=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATTTTGGAGGTAGCCC
R:
TCCTCCCATGTTCCTGCTACC
Band lengths:
229-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]