BtaINT0072903 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70203524-70204009:+
Coord C1 exon
chr4:70203524-70203643
Coord A exon
chr4:70203644-70203886
Coord C2 exon
chr4:70203887-70204009
Length
243 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TTTCCAAATTTTTTTTACAGGAA
3' ss Score
10.77
Exon sequences
Seq C1 exon
GTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAG
Seq A exon
GTAATAAATTCACCTGCAACCTTTATGTGGGAATTTGGATTGGAATTAATGGATTTAACACGTAAGATTTTTCATTTCATTGTTGTCAATAGTTGTCTTTAAAAATGTAGAACTGTAGATAGGTGTTTTGCATTCTGCTTTGTTTTTGTGGGAAATTTGTCTAAAATACCTAGCATGTATCATCGGTTTAATACTTGATTGTATGAGGTTCATTGTGCAAAAATTTCCAAATTTTTTTTACAG
Seq C2 exon
GAAATTACGGGAGTGGAAATTACAATGATTTTGGAAATTATAACCAACAACCTTCTAACTATGGTCCAATGAAGAGTGGAAATTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726:ENSBTAT00000007527:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAATTTTGGAGGTAGCC
R:
CCCCCATGTTCCTGCTACCA
Band lengths:
228-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]