HsaINT0076964 @ hg19
Intron Retention
Gene
ENSG00000122566 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Coordinates
chr7:26232871-26233314:-
Coord C1 exon
chr7:26233195-26233314
Coord A exon
chr7:26232994-26233194
Coord C2 exon
chr7:26232871-26232993
Length
201 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
GTATTCCAATTTTTTAATAGGAA
3' ss Score
7.95
Exon sequences
Seq C1 exon
GTGGCAATTTTGGAGGTAGCCCCGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAG
Seq A exon
GTAATAAATTCACCTGCAACCTTTATGTGGGAATTTGGAATTAATGTCTTTGTAACACTTGATCTTTTGTTTCCATGTTTGTCACTAGATGCCCATAAAATTTGTGGATAAGTGTTTGCTTTTATTTGTTTTTATGGGAGCTTTGTCCTAAGTCCTTGGTTTAATGTTTGTATTGTTCTGAGTATTCCAATTTTTTAATAG
Seq C2 exon
GAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122566-HNRNPA2B1:NM_002137:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAATTTTGGAGGTAGCC
R:
CCCCCATGTTCCTGCTACCA
Band lengths:
228-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)