GgaINT0098567 @ galGal4
Intron Retention
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32318761-32319240:-
Coord C1 exon
chr2:32319121-32319240
Coord A exon
chr2:32318884-32319120
Coord C2 exon
chr2:32318761-32318883
Length
237 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
TTCTTGTATTGATTATTCAGGCA
3' ss Score
5.77
Exon sequences
Seq C1 exon
GTGGCAACTTCGGTGGCAGTCCTGGTTACGGAGGAGGAAGAGGAGGATATGGTGGAGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTATGGAGGTGGCTATGACAACTATGGAGGAG
Seq A exon
GTAACCTACTGGCTTGAAGTGATCAAGTTTCAGTTGTAAATTAGTGCAAATCATATGAAATTTGGGAGGTTTATGGTGGAGTAAGCAAGCTCAATTTTATAAATGGAATGAAAAAGCAGCTGATTTTACGTGCTGCTGGACTACTTGTATCATTTTGTCTTTTAATTGTGTAATAAGGAGAATTCTGTGGACATTGTAGCTCATCCAGACATGTCTATTCTTGTATTGATTATTCAG
Seq C2 exon
GCAATTATGGAAGTGGAAACTACAACGACTTTGGAAACTACAACCAGCAGCCTTCTAATTATGGTCCAATGAAGAGTGGAAATTTTGGTGGCAGCAGGAACATGGGGGGACCATATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036:ENSGALT00000017975:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=NA C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAACTTCGGTGGCAG
R:
CCCCCATGTTCCTGCTGC
Band lengths:
228-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]