BtaINT0072902 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70202332-70203643:+
Coord C1 exon
chr4:70202332-70202394
Coord A exon
chr4:70202395-70203523
Coord C2 exon
chr4:70203524-70203643
Length
1129 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
AAAGGCTTATTTTATAATAGGTG
3' ss Score
4.94
Exon sequences
Seq C1 exon
ATGGATATGGAAGTGGCCGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAG
Seq A exon
GTCAGTTTTTTCTACTTTTTGATAATACCTGTCTAAAATCTTAAGCATAAACATGAAATGTCTCTTCTAAATTTTCATCTTAGCTGTTGAAAATTACCAAAAAAATTACTTGGAGGTGGTGTTATACTTTTGCAACATTAATTGGATAGATTTTAAATAAGAATTTAAAAGATGCCCAATTGTTTCTCAAGCAAAAGAATTGGAGATAGTGATATTTTGTATAGTGTTTTCCTTAAAAGTATTAAAAAGTGGTTATTGGCAAGATGAACATAATGACAGGGGAGTGTTTGTAGGAGCACTGTGTTGTCTCATCTCTTACCAAGATGAATCTACCAGGACAATGTCCCAAAAGTCCCCAAGAGAATTTTTCCAGAACATACCTAGTGTGCTGCTTCTGTGTCTAGCTAAGGTTTTAAGCCACTGTTAAGTTTTAGTTCATGTCTTTTATTGAAGTACAGAAAAGATAGGTACTTAATGACAAATGAAGAGGTTTGAAACTGAGCTCAGGATGCCTCATTCTGGTTTTGCACTGATTAGGCATGATTTAAGTTACGCTCCTACATGTCACTATTTCCAGCTTTGCTTTGAAATCCAAATATTGATTTGGTTTTATGAGAAAGATGAGTTTTTACAGTTAACTGCAAGCAATCTGAAACTACCGATTGAAGTTTTAAGTCAGTGTGAGTTTGCTAATTTCTGGTTCTTCCCCCCTCCCCCCATTTCTACTGAAGAAAAAGGTATAGTGGGCATTTTATTTAAGAGAAATGGTAGGTAATTCGCATTAGCCCACACGTCTTGTCTGCCCCAACTTACCCCACAAACTTACACAAATATAATTATTTCAAGATACCGTCAAGGGAATCCATAATATATTTATTTAGTTTTTGGGGGAGACCAGTGGCATTACAGATAATTATAAAGGTTTTACCCAGTTGGTTTGTGGGTAGGCCATCTTCACTGGCAACTGTTCACCAAGGTGGATATTCAGAATCTGCCCTTGAGGCTATTAGAGAAGATGTTATGGAAAGAATCTTGCAAAATTGAGTTTTGGAAAGCTGGAAATGGATATAATAAGACAGTTCAAATGGCGTTGAAAATACTAATTACTTAAAGGCTTATTTTATAATAG
Seq C2 exon
GTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726:ENSBTAT00000007527:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATATGGAAGTGGCCGTG
R:
TCCTCCATAGTTGTCATAACCACCT
Band lengths:
182-1311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]