GgaINT0098566 @ galGal4
Intron Retention
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32319121-32319711:-
Coord C1 exon
chr2:32319649-32319711
Coord A exon
chr2:32319241-32319648
Coord C2 exon
chr2:32319121-32319240
Length
408 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
AAAGGATTATATTGTCATAGGTG
3' ss Score
3.37
Exon sequences
Seq C1 exon
ATGGGTATGGGAGTGGCCGTGGGTTTGGTGATGGGTATAATGGATATGGTGGAGGGCCTGGAG
Seq A exon
GTAAGCTTGCTTCTGTTTGTGTTTTTATTTTTTTCTCTCACTTAGAACTGCTATACATTCATTTACTATTCATGTAAAATTTCAGAGTGCCGTAGGTATTCCGTTGGCTTTAAGAAACACATAAATACTGGCTCACGTTATACCTGATGTGGGAAATTGCATGGTTATGTCTTGAACAACCACGTCCTTCTCTTTAGAATAGTAGCAAGTCACTTCATTGATGTTTTTAGGCAGTCTGGCTAGTGGGTTTTAGTCACAATTCAGTTAGGGTGGGAGTTGGATATGTATCTTCTTGAAACTCCTGCCCTTTTTGTTCCCCTGTAGACTTCTCAACAGAAAAATAGCCTGTGTAGAACTTGGTTACCTTCTACACTGGAAAGCTTATTTTAAAGGATTATATTGTCATAG
Seq C2 exon
GTGGCAACTTCGGTGGCAGTCCTGGTTACGGAGGAGGAAGAGGAGGATATGGTGGAGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTATGGAGGTGGCTATGACAACTATGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036:ENSGALT00000017975:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTATGGGAGTGGCCG
R:
TCCTCCATAGTTGTCATAGCCAC
Band lengths:
182-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]