RnoINT0081760 @ rn6
Intron Retention
Gene
ENSRNOG00000000156 | LOC100911486
Description
multiple epidermal growth factor-like domains protein 6-like [Source:RGD Symbol;Acc:6492904]
Coordinates
chr5:171552597-171553925:+
Coord C1 exon
chr5:171552597-171552722
Coord A exon
chr5:171552723-171553802
Coord C2 exon
chr5:171553803-171553925
Length
1080 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
CCTCTGGCTCTGGTGTCCAGGGA
3' ss Score
5.27
Exon sequences
Seq C1 exon
CCATCAGCTCCTGCACTCTGGGAAACGGTGGCTGCCAGCACCAGTGTGTACAGCTCACAGTGACACAGCACCGCTGCCAGTGCCGGCCCCAGTACCAGCTGCAAGAGGATGGCAGGCGCTGTGTGC
Seq A exon
GTAAGTATTGTGTAGCTGGAGAACGAATGAGGGGCTCCAGGATCCAGGGAAGAAGCTGATGTGAGGATGCCTGGTGGGAGGAGGGAGGTGAGGGCTGCTGGGGGCCTGAGCTGCAGGCCTGGTGAGTGCTATGGGATTTCAGGTCTTCAGAGCAGGAGGCTCAGGATGCAAATAGCACCGTGGTTCCCTAGATGTCTGTCTGGGGTCTGGATGGAGGAGATAGCCAGGCCAGCATGCTCTGGGACTCTGGGCTTGCCTAAGAGAAAAAGACTTTGCTGAAGGAGTTTGTGGGGCAGGATCACAGTCCCCTCCCCCAGATGTGGAAGTGGGACACATCAGGTGTCCCCCAGCACAGTAGGAAGCAAGTGTCAATGTGAGGGGGCCAAGGCCAGCCACGTGGGTGGAATGGCATGGGGTCTCAGGACTGGGAGATCACAGAATTAGGGGGACAGAGGGCTGAGTAGGTTACACAGCTGGGACTGTCAGGAGTTCAGGGATGGAGGGAATCACAGAGCTGGAGCCGTGGGGCTAGAAGATAAAAATGGTGAGAGTTTCACAGGGCTGAGAGAGTTACAGGGTTGAGAGGGGCACCAGGCCTTGGGGGTTCATAGGCTTGGCTGACCATATGGGAGGGATCCTTGGGTCAGAGGATTGGGGAATCATAAGGTTTGGGGCTCCCAGTCTCAGTGTCTGTTTCAACACTGTATCTCAAAGCAAGAGCTCTGGGAGGTGCAGGCCAGGCTCACAATCAGAGCTGACTTGGGCTGGCCACCTCCTTGCCGGATGGCCTTAAGCTAGGCCTCACTTCCTAACATGGTGCCCATTCTTCGGGAGCCATGACACTTGAAAGTTGTGGGTGTAGTGGGGTACTGACTCTGTTCTGGTAGAGCCTTCGAAGCCACAATCTTGGCTATGGAGACTAATTGGGGGAACTCAGAGCTGCCTACAACTGGGGGACCATGGCACAAGCTGGAGCTGAGAGGAATTCCTGCACTGGTGTGTGGGGGGGATTCTGAGTCTGTCAGAGTCCCCTTCCCCATCTCTTTTCTCTGCCTCCACCCCTCTGGCTCTGGTGTCCAG
Seq C2 exon
GGAGAAGCCCGTGTGCAGAAGGCAATGGTGGCTGTATGCATATATGCCAGGAACTCCGGGGCCTTGCCCACTGTGGCTGCCACCCCGGTTACCAGCTTGCTGCAGACCGCAAAACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000156:ENSRNOT00000000169:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGCTCCTGCACTCTGG
R:
TTCACAGGTTTTGCGGTCTGC
Band lengths:
247-1327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]