BtaINT0091717 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50781508-50782666:+
Coord C1 exon
chr16:50781508-50781633
Coord A exon
chr16:50781634-50782543
Coord C2 exon
chr16:50782544-50782666
Length
910 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CCTCCTGGCCATGACCGCAGGGA
3' ss Score
6.44
Exon sequences
Seq C1 exon
CCATCAACTCCTGCGCTGTGGGCAATGGTGGCTGCCAGCACAACTGCGTCCAGCTCACAGTGACCCAGCACCGCTGCCAATGCCGGCCCGAGTTCCAGCTCCAGGAGGATGGCAGGCGCTGCGTCC
Seq A exon
GTGAGTGTCCCAGGGGTGAAGGCAGGGGGTCAGGGCTGGGCCTTCCACTGGGACCCCCTGCCCGTTCTCCATGCTCCTTCAGACCTTCCCCGGGGATCATGCAGCCAAGTCCCTCCCTGCTTGGCCACTGGTGTTGCAGGAGGGTCTGAGGGGTCCTATCTATGTCGTTGCCTTTGGTTGACCTGTGATCACACTGGGGGCTCCTTGACTGTGGAGAGTGATGGGGCATCATCCAGCCCCTCTGGGCCCTGGGGAGGAAGCCCGTCAGGCTGTGCTCTGGGATCTCACGTCTTTGGGGGCAGGAAGCTTAGGATGGGGGTACCGGCATGAAGAGGAAGGGCATCCTGTGTTGTCTCAGTTCTGAGGCCTGCCCTGGCCTTGGCGTGGGCATGCAGGCCCCAGCCCTGGCCCTCAGGCAGAGGAGACTGGCCAGGCCCTGTCTGGCTCCTTGCCCTGGGGTCCCAGGGCTGTGGGTCATGGAAGGGGTCCTCTGCTGACGGAGAAGGTGGAGCAGGCCCAGGAGACCCCTGAGAAGTGGGAAGGGATGGGTGCAGGGCTGGTGCTGAGGGAGTCCTTCCCACCCTACCTGGCCTTCTAGGTCCCTGGGGGTCAGGACTGAGTGTGGGCCAGCGGTGGGGCAGGGTGGCACGAGTTCACAGGGCTGGGGCTCCGACAAGAAGAGAGGTGGGGGAGCTGGCCATGCGTTCACCGCCCTCTGTCTTCTCTGGAGTCGTCTGGGAGTGCCTGGGGCTCCCCTGGCCCCTAGTCCACGTCCCAGCCTGTCAGGACAGAGCAGGAGGGGTGAGATCTCTAGGTGGGGGCTCACCAGAGGCCCTGGGGTGGGGACCCCAAACCTGCTGGATCCTCCACGCCTGCCCTTTGCCCCCATTCCTCCTGGCCATGACCGCAG
Seq C2 exon
GGAGAAACCCATGCGCAGACAGGAATGGCGGCTGCATGCACAGGTGCCGGGCACTCCGGGGCCTTGCCCACTGCGAGTGCCGCGCGGGCTACCAGCTGGCAGTAGACCGCAAGGCCTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACTCCTGCGCTGTGG
R:
CAGGCCTTGCGGTCTACTG
Band lengths:
243-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development