RnoINT0091317 @ rn6
Intron Retention
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52351138-52353563:+
Coord C1 exon
chr18:52351138-52351266
Coord A exon
chr18:52351267-52353326
Coord C2 exon
chr18:52353327-52353563
Length
2060 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTGTTTCCACCCTCTCCTAGCTG
3' ss Score
8.83
Exon sequences
Seq C1 exon
AATGCCCTGCGGGAACATACGGCTATGGCTGTCGCCAGATCTGCGACTGTCTGAACAACTCCACCTGTGACCACATCACCGGCACGTGTTACTGTAGCCCAGGGTGGAAAGGAGCACGATGTGACCAAG
Seq A exon
GTAAAGTCCCAGTGAATAACGAACGACTGCTTCTCGGTGTGTGGCCACCGTGCAGCTCGGTGTTAAGTACTTTCCCTTACACTAACCTGGGTAAACCTAATTCAAACTCAGATGGGCTAGCTGATTATGTGGTTGCCGGATGGATACCTTATTGTCGCCATCTTTAATAGATAAAGAAACCAGCTAAAGGTTGTAGTAGTTAGAGAAGGTTCTCAAGGACACACAGCTATGACACAATGCCACAGCTTTTCCTATTCTAAAATCCATGAACAACTTTCTAATAATTTTAGATTTATTCAGGCATAGCTGGCATTTAAACCCACACACATTTACCTTACACAATTTTCTGAAACATAAAACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATCCCCAAAGCAACCACCCCAATAAAGACAGTATCCCTCACTCTCTTACCTGTTTCTGCATGCCCGCCCCTGCTACTTCTTCCATAGAAGAAGGCCACCACTGACCTTTCTGTCACTTTTTGCATTTTTTTTCTAGAATCTCCTGTGGAAAGAATCACATTGTATTTTTTTTGTAGTTTTTCATAAATTTATTTATTTATTTCCTTACATCCCTCTCCTCCCCGTCCCCCCTCACACAGCCCCTCCCCGTCCCCTCCTCCCCTTCTCTGAGAGGTGGGAGCCCCCCCTCCAGATATCAACCCACCCTGGTACCTCAAGTCACTGCAGAACTAGGCACATTCTGTCCCACTGAGGCCAGACAAGGCGACCCATTTAGGGAAACCGCATTGTATTCTTCTTATACCTGGCTTTGTTTAGTTACCATAAGCGTTTTGAAGTTCAAATGTGTTTTTTAAACAAACTGGTAGTTCAGTTCTTTGCTGCTGTGTACTATCCCGTTGAATAGGTATACCATAATTTGTGGACATCCGGGGTGGTTTTCAGTGTTTGGCCGTCACTGCTAAGACCGTGTGGGCAAGGAGTGCCGATCTCCACATGACATGTGATTTCATCTCTTATGGGTTAAACACTCCAGAAGAGAGTGATTGAATTGTAAAATGGGCATATACTTAACTTTTGAAGAAATTTGCGTAGGTGTTGTTTTAACTGGGTGTGTATCATATTCATCTGGGATTATTTGTCAAATATTTTTTTCATGGAAGTACTTGGACAGTTCTGACACTCTGGGGCAGAGGGCCTAGAATGTTCTCCTGGTGGTTATGAGTGGGACTTCCACTGGGAGTTTTGACTTTGATGGGTAGAGGTACAGGTGTTATTACCAGGAACTATAAGAGAAATCTTCCTGGTGTTGAAAATAGCTTTTTATAAGATGGTGTGTCTGGCAGTGAGAGGCTTATTGACCTAGGCTTGTGTCGGAGCTCTGCTTGTTTAGAAGGCAACTCTCTCTTTAAAATATCAAGGTCAGGGGCTGGGGAGATGGCTCAGTGGTTAAGAGCACTGACTGCCCTTCCAGAGGACCTGAGTTCAATTCCTAGTGCCCCCATGGCTGCTCGCAGCTCTATCTCCAGTTCCAGAAGATCTGAAACCTTCAAGTCACACATGCAGGCAAAACACCAATGAACATAAAATAAAAATAAATAAATCTTTTAAAAAAAATATTAAGGTTAAATGAAAGATTGAGTTAGACTGGTAGGTATGGACTTATTCCCATGTGATCAGCACTAGAGAACTCATCAAGCAAAACAAAAATTAGGAAAAGTATTATCCAAGCTTAATTGCCAATCTGAGTTTAATCTGAAATCGATGAGTAGCTCCCAGCCCGCGCCAGACTCTCGGGGTGCATACACTGCCTCCCGAGGGCTTTGCAGGGGCGTGGCACTGGCGACGTTAGAAAGTGTAGAGCGTCTGTTTTTACCGTGCTTCCAAATAAGCGTCTCACCGACTGAACTCACCCAGGTGCTAGGCCAGTGGGTGTGTTTCTGGTTTTTGCTTTAATAGAGGTAGAACCTGTATCTGGCCCACGGTCACCCATACTCGGTCTGTTTCCACCCTCTCCTAG
Seq C2 exon
CTGGGGTCATCATCGTGGGCAATCTGAACAGCTTAAGCAGGACCAGCACCGCCCTTCCTGCTGACTCCTATCAGATTGGGGCCATCGCGGGCATCGTGGTCCTTCTGCTTGTTGTGCTCTTCCTGCTGGCGCTGTTCGTTATCTACAGACACAAGCAGAAGAGGAAGGAATCGAGCATGCCGGCCGTGACCTACACCCCTGCCATGAGGGTTATCAATGCAGACTATACCATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674:ENSRNOT00000037901:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF0005319=Laminin_EGF=PU(82.5=75.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(15.0=7.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]