RnoINT0091337 @ rn6
Intron Retention
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70168233-70169590:+
Coord C1 exon
chr8:70168233-70168361
Coord A exon
chr8:70168362-70169461
Coord C2 exon
chr8:70169462-70169590
Length
1100 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
ATCCCACCCACCCCCCACAGCCT
3' ss Score
7.22
Exon sequences
Seq C1 exon
TGTGTGCTGGAGGGCACTTTGGGCAGGACTGTGCCCAGCTCTGTTCCTGTGCCAACAACGGGACCTGCAGCCCCATTGATGGCTCCTGTCAATGCTTCCCTGGATGGACTGGCAAGGACTGCTCACAGG
Seq A exon
GTAAGCTGCTGCTTCTAAAGTGTTCCTCTCCCTGCCATGGCACCAAAGGGCTGAACTCTCCTGCAGACAAGAGTATCCACCCGAGACCCATTTATTTATTTTTATTATTTCTGTGTGTATGACAAGTGTCACAGCAAGAATGTGGAGATGAGAGACCAACTATAGCGCCAGTTCTCTTCTGCTTTTATGGAGGTTCCAGGGATCAAACTCAGGTTCACCACAGGCTTGGGTGGCAAGTGCCTTTACCCACTCAGCCACGTCACTGTTCTTTGACCCTGAAAGTCCCATTTAGCGCTACGTCAAACTTGAGTTACTAGAACTGACTGTGGAGACTGTTACCGCAGGTATTAAAGGCATCAATACTGTCAGTGCCATTAATGCTGTGAATTGTGAGGACCCACACTCCACTAGCATCTCTCTGTAAAAGATGCAGTCAGAATACGGATGGGGAGGAGGGAACAAAACTGGTTTGTAAGTGGCCAGACTAGGACAGCCACCATTGGAAGGATGGGAGCACCCATGATATGGCTCCTGTCTGTGAGTGATGTCCTGAGCACCCTAAGCCTGAACATGGTGCTACAGTCTGACACCAAGGCAAAAAACCCTTCCCAAAGGGTCCCCAGCCTTGGCCTGTGAAACTCCTTGTCTGTACATAGTACCTGTAAGGAGGTCCCAGTTAAATGGCTGGACCTGGAGGAATTCCATTTTGGTGTAAGCCACAGGCTCCAATCTCAAACAACAGCACAAGAACCCAAAGAGAAGAGGGTCCCTGCCACCTGTGGAGAAATCAGTGCTCTTGGTGTTACTCCAGCCGTCCCTGTGAATCCTTCTATGAATGGAGGCACAGAAGCCCTTCCAGTAGGGCTGCCTTAAGTCACCCAGATTAGAATAGGCAGAAATCTGTTTCTCATAGCAATCCCAGGGATGAGGCCAAGAGGAGAGCTGATTCTGAGACTAGCATTATCAAGTCCCCAAAGGCCAAGAGATGCCCCTCTGGGTCCATCCAGGTGTTCTGGCTCTGATGTGTACCCGCCTCCCCTTCCTTTCCTCCTGCTCCTTTGTCCCGCCCTCTCCCTCTGCATCCCACCCACCCCCCACAG
Seq C2 exon
CCTGCCCATCTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACCGGACTCTTCTGCACGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634:ENSRNOT00000037941:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(67.4=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(30.2=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAGGGCACTTTGGG
R:
GCTGCGTGCAGAAGAGTCC
Band lengths:
254-1354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]