RnoINT0095725 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214794865-214795499:+
Coord C1 exon
chr1:214794865-214795021
Coord A exon
chr1:214795022-214795370
Coord C2 exon
chr1:214795371-214795499
Length
349 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
GCTCTGGCCTTCTTGCTCAGCTC
3' ss Score
5.48
Exon sequences
Seq C1 exon
GTTGACTCTACAAAATACTACGAAGCCTGTGTGCATGATGTGTGTGCCTGTGACTCAGGAGGTGACTGTGAGTGCTTCTGCACTGCCGTGGCCGCCTACGCCCAGGCCTGCCGTGATGTGGGTGTGTGCTTGTCCTGGAGGACTCCAGACATCTGCC
Seq A exon
GTGAGTGGGGCTCTGCTTATGGGATTGAAGGGTGGGGCTGGGGCTGGGGTGGGTGGCAGTCTCTATACCTCCCTCGTGGCTTGGAGTCTGGCCATTTTGACACGTGAGTGTATGGTTGTGGGTGGGGGCGTGTGTGCATGTGCACGTGTGTGTTTGCACATGTGTCCACATATCTATATACATGTATGGCTCTTTGACCTGACAAGTGGTAGTTGAAGTTGAGGTCTCCAGGACATGGGGTAAAGAATGAACCCAAGGAAGCTTCTGCCTACCTCGAGGCCTGTGTATCTGGGTGCAGCCCAGCATGAGACCTAGCAGGCGCCTGCTTAGCTCTGGCCTTCTTGCTCAG
Seq C2 exon
CTCTTTTCTGTGACTACTACAACCCTCATGGGCAATGTGAGTGGCATTATCAGCCCTGTGGAGCCCCCTGTCTGAAGACCTGTCGGAATCCATCTGGACACTGCCTGGTTGACCTGCCAGGCCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGACTCTACAAAATACTACGAAGC
R:
CTTCTAGGCCTGGCAGGTC
Band lengths:
286-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]