RnoINT0096499 @ rn6
Intron Retention
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53625243-53625955:+
Coord C1 exon
chr10:53625243-53625284
Coord A exon
chr10:53625285-53625798
Coord C2 exon
chr10:53625799-53625955
Length
514 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
ATTTTCTTTTCCTCCCATAGACC
3' ss Score
11.82
Exon sequences
Seq C1 exon
CTGTACAACCTCAAGGACCGATACACGTCCTGGATGATCTAC
Seq A exon
GTGAGTGGCTACTCACCAACAGGCTATGCTGGGACATTAGCTGGGTGCTGGGGAGTGGGGAGAGGCACTTTGAAAGATTCTCGTTTGCCTGGCCAAAGGAGAGGAAATGAAGTAGAGAAGTGAATGACCAGACAAGGAGAGATAGATGGGATGGGAAGGGGAGGGGCTGGAGGAAGGGAGGGAGGGAGGAGGAAGGCGAAGGAGGAGCTAAGATTGGGAGGAGGAGCTCCAAAGAGCAAAAAAGCTGAGGTTACCTTGAGCTTGGTATTAGCTGTGGGAGGACTGGCTACTCTCCCCCTTGAGTTTCAGTTACTTCATTCATCACTAGAAATCACGATTTCTTTATGAATTATCAAAAGAAGCCTGGAGTGTTAGTAAAGGCAATATATATACATATGTATATATGTATATATATGCAGTACATGTGTATATGTATATATGTATATACATATGTATGTATGTATGTATGTATGTACATATGTAAGTACGGATGTATTTTCTTTTCCTCCCATAG
Seq C2 exon
ACCTATTCAGGCCTCTTCTGTGTCACCGTCAACCCCTACAAGTGGTTGCCGGTGTACAACCCTGAGGTGGTGGATGGCTACCGAGGCAAAAAGCGCCAGGAGGCCCCGCCCCACATCTTCTCCATCTCTGACAACGCCTACCAGTTCATGCTGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276:ENSRNOT00000004147:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACAACCTCAAGGACCGA
R:
CCGTCAGCATGAACTGGTAGG
Band lengths:
199-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]