RnoINT0096506 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33622084-33622473:-
Coord C1 exon
chr15:33622403-33622473
Coord A exon
chr15:33622172-33622402
Coord C2 exon
chr15:33622084-33622171
Length
231 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TCCACTCTACTCTTACCCAGGAA
3' ss Score
6.63
Exon sequences
Seq C1 exon
GTGACAGTGGGAAAGGCAAAGGAGGCAAGAAGAAAGGCTCATCCTTCCAGACAGTGTCTGCTCTCCACCGG
Seq A exon
GTAAGAAGGGCCCAGAGATTCCACAATACCTGTAGTGGGTAAGGTCAGAGCCTCTCGGCTGCAACACTCTGATGCTCTGTACGCGGGACAGAAAGAGTTACGTGTTCGTAACACTGTGAGCTCGCCAGCTCTCTTTTGATGGTTCTGGTGATGGAGTATCTGCAATCCCGGACTCAGAAACCCAAGCGAAGGTTCACATGGCCTCTGTCTCTCCACTCTACTCTTACCCAG
Seq C2 exon
GAAAATCTGAACAAGCTGATGACAAACCTGAGGACCACCCATCCTCACTTTGTGCGCTGCATCATCCCCAATGAGCGGAAGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGTGGGAAAGGCAAAG
R:
CGCTCATTGGGGATGATGCAG
Band lengths:
148-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]