HsaINT0107805 @ hg38
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:7576]
Coordinates
chr14:23397170-23397613:-
Coord C1 exon
chr14:23397543-23397613
Coord A exon
chr14:23397258-23397542
Coord C2 exon
chr14:23397170-23397257
Length
285 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
CCACCTTCATCTGCCTCCAGGAA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GGGACAGTGGTAAAAGCAAAGGAGGCAAGAAAAAGGGCTCATCCTTCCAGACGGTGTCGGCTCTCCACCGG
Seq A exon
GTAAGAAGGGCCCAGGGGTGCCAGGACACCTGGTGGAATGGCCCAGCCCAGAGACTTCTGGCTGCACCACCTATTCTGATGCTTGAGTTTGATGAGGAAAGAAGCTAGGGCTACGTAGTCGTTTTTTAGTGTGTAGATTCCACAAAAGCCTGAACTCACGTCACAAATTATGTGGCAGCCCCTGTCCCTTTGATGATTCTGGTGGAGAGTGTCTGGGGACCAGGGTTTAAGGGCCTAAGGGATGGTCCTTGTGGCTCCTAACTCCCCACCTTCATCTGCCTCCAG
Seq C2 exon
GAAAATCTCAACAAGCTAATGACCAACCTGAGGACCACCCATCCTCACTTTGTGCGTTGCATCATCCCCAATGAGCGGAAGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616:ENST00000356287:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGTGGTAAAAGCAAAGGA
R:
CGCTCATTGGGGATGATGCAA
Band lengths:
148-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development