BtaINT0097331 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21359919-21360366:+
Coord C1 exon
chr10:21359919-21359989
Coord A exon
chr10:21359990-21360278
Coord C2 exon
chr10:21360279-21360366
Length
289 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
CACTTCTCATCTGCCTCCAGGAG
3' ss Score
9.23
Exon sequences
Seq C1 exon
GGGACAGCAGTAAAGGCAAAGGAGGCAAGAAAAAGGGTTCATCATTTCAGACAGTGTCAGCCCTCCACCGG
Seq A exon
GTAAGAAGGGCCCAGAGATACCAACAGACCTGTGGTGGGCAGACCCAGCCCAGAGCATTTTGTCTGCACCACCCTTAACCTGATGCTCTGAGTCTGGGGAGAAAAGAAGCTAGAGTTATGTCGTTGTTTTTGGCATGTAAATTCTACACAAGCCTGAATTCACATCATAAGTTATATATCACCTCCCAATCCCTTAGAGGGCTCTGGTGACAGGTTGTCTAGGGCCCGGGGTCAGGACTAAAGGGATGGTCACTGTGGCTCCTGACCTCCACTTCTCATCTGCCTCCAG
Seq C2 exon
GAGAATCTGAACAAGCTGATGACCAACCTGAGGACCACTCATCCTCACTTTGTGCGCTGCATCATCCCCAATGAACGGAAGGCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCAGTAAAGGCAAAGGA
R:
GGAGCCTTCCGTTCATTGGG
Band lengths:
156-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development