RnoINT0102969 @ rn6
Intron Retention
Gene
ENSRNOG00000050690 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:RGD Symbol;Acc:2318602]
Coordinates
chr8:64799181-64799616:-
Coord C1 exon
chr8:64799513-64799616
Coord A exon
chr8:64799403-64799512
Coord C2 exon
chr8:64799181-64799402
Length
110 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GAGTCTCCTTGCTTTCCAAGCTG
3' ss Score
4.51
Exon sequences
Seq C1 exon
GTGCCAGGTAGGGGCAGGAATGTGCCCAGTGGATAAGGCCCATCGAAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATG
Seq A exon
GTGAGTGGTGGGCTGGGCACAGTGAGGTGGGGAAGGCAAGAGAGCAAGTGGTATCACTGCCAAGGGGTGGGTGTTGTGTGTCCGTGTCCTGAGTCTCCTTGCTTTCCAAG
Seq C2 exon
CTGTACAGAATGAGCGCCAACCTCGAAGCCTGGCTCAGGTCCACCTGGAGAGCATGGAACCAGGCAGTGATCCCCGACCAGAACCGGTGGTGGCCTCTCCTGCCTTGGCAGGGCCCAGTCCCCGGGGCCCCACATCTGTATCTGCAGCCAGAGCCATGGGTCACCACTTTATGGCCAGCCTCATCTCTGCTGAGACATGTGCTAAGCTGGAGCCAGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050690:ENSRNOT00000073122:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.707
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(46.5=91.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGCCCAGTGGATAAGGC
R:
CATGGCTCTGGCTGCAGATAC
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]