GgaINT0027526 @ galGal4
Intron Retention
Gene
ENSGALG00000002093 | NR2E3
Description
photoreceptor-specific nuclear receptor [Source:RefSeq peptide;Acc:NP_989925]
Coordinates
chr10:897800-898234:+
Coord C1 exon
chr10:897800-897903
Coord A exon
chr10:897904-897979
Coord C2 exon
chr10:897980-898234
Length
76 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ATGTCACTTTGTCCCCACAGCTG
3' ss Score
10.83
Exon sequences
Seq C1 exon
GTGCCAGGCAGGGACGGGGCTGTGCCCAGTGGACAAGGCACACCGCAACCAGTGCCAGGCATGCCGGCTCAAGAAGTGCCTGCAAGCCGGCATGAACAAGGATG
Seq A exon
GTGAGCAGGGGGGATGTGCTGGGGAGGGAGGTGGCAGTGTGCGTTGGCTGCTGTTGATGTCACTTTGTCCCCACAG
Seq C2 exon
CTGTGCAGAACGAGCGCCAGCCCCGGAGCACAGCCCAGGTCCGGCTAGACAGCATTGAGCTGGACGCCGAGCTGCCCCCGGAGCACGTGGCTGCCACGCGTGATGTCCCCCCGGTTCCCTGCCCGGCCCCCCGTGGCCATGGGGCTACTGCTGCCACCGCTGCCGTCCCCCGCACGCCCACACCACCCACCAACCACCGCTTCATGGCCAGCCTGATGACGGCCGAGACCTGCGCCAAGCTGGAGCCCGAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002093:ENSGALT00000003264:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.872
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(46.5=91.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGGCATGAACAAGGATG
R:
TGGCAGCAGTAGCCCCAT
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]