MmuINT1024517 @ mm10
Intron Retention
Gene
ENSMUSG00000032292 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
Coordinates
chr9:59948603-59949028:-
Coord C1 exon
chr9:59948925-59949028
Coord A exon
chr9:59948825-59948924
Coord C2 exon
chr9:59948603-59948824
Length
100 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GAGTCTCCCTGCTTTCCAAGCTG
3' ss Score
4.03
Exon sequences
Seq C1 exon
GTGCCAAGTCGGGGCAGGGATGTGCCCAGTGGATAAGGCCCATCGCAATCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATG
Seq A exon
GTGAGTGGTGGGCACGGTGAAGTGGGAAAGGCAGGAGAGAAAATGGCATCACTGCCAAGGGGCAGGTGCGTGTGTGTCCTGAGTCTCCCTGCTTTCCAAG
Seq C2 exon
CTGTGCAGAATGAGCGCCAACCTCGGAGCATGGCTCAGGTCCACCTGGATGCCATGGAAACAGGCAGTGACCCCCGATCAGAACCAGTGGTAGCCTCTCCTGCTCTGGCAGGGCCCAGTCCCCGGGGCCCCACGTCTGTGTCTGCAACCAGAGCCATGGGCCACCACTTTATGGCCAGCCTTATCACCGCCGAAACTTGTGCTAAACTGGAGCCAGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032292:ENSMUST00000034831:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.707
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(46.5=91.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGAAGAAGTGCTTACA
R:
TTTAGCACAAGTTTCGGCGGT
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types