BtaINT0103579 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014236 | NR2E3
Description
Bos taurus nuclear receptor subfamily 2, group E, member 3 (NR2E3), mRNA. [Source:RefSeq mRNA;Acc:NM_001167900]
Coordinates
chr10:18632670-18633112:+
Coord C1 exon
chr10:18632670-18632773
Coord A exon
chr10:18632774-18632863
Coord C2 exon
chr10:18632864-18633112
Length
90 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GACCCTTCCCACCTCCCCAGCCG
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTGCCAGGTGGGGGCAGGGATGTGCCCGGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTGCAGGCGGGCATGAACCAGGATG
Seq A exon
GTGAGTCAAGAACCCCATCCCGGAGAGGCATGGCAGAAGATATGGGGGTGCATGATCCGTGGGGTGTCCTGACCCTTCCCACCTCCCCAG
Seq C2 exon
CCGTGCAGAATGAGCGCCAGCCACGGAGCACCGCCCAGGTCCGAATGGACAGCGTGGAGTCAGAAACGGAGCCCCGGCTGCAGCCCCTGGCGACCCCGCCGGCCCTCGCAGGGCCCAGCTCTCGGGGGCCCACACCTGTCTCTGCAGCCAGAGCCCTGGGACCCCAGGCCCTCATGCCTCCGGGGCACCACCACTTCATGGCCAGCCTGATAACAGCTGAAACCTGCACTAAGCTGGAGCCCGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014236:ENSBTAT00000018926:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.762
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(46.5=91.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAAGAAGTGCTTGCAGG
R:
AGAGACAGGTGTGGGCCC
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development