HsaINT0115614 @ hg19
Intron Retention
Gene
ENSG00000031544 | NR2E3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:HGNC Symbol;Acc:7974]
Coordinates
chr15:72104106-72104516:+
Coord C1 exon
chr15:72104106-72104209
Coord A exon
chr15:72104210-72104294
Coord C2 exon
chr15:72104295-72104516
Length
85 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GACCCTTCCTGCCTCCCCAGCCG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTGCCAGGTGGGGGCAGGGATGTGCCCCGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCCTGCAGGCGGGGATGAACCAGGACG
Seq A exon
GTGAGGCGGGGGCTGGCCCGGGGGGAGGTGACAAGAAATGGGCAGCGGGACTGGCGTGTCGTCCTGACCCTTCCTGCCTCCCCAG
Seq C2 exon
CCGTGCAGAACGAGCGCCAGCCGCGAAGCACAGCCCAGGTCCACCTGGACAGCATGGAGTCCAACACTGAGTCCCGGCCGGAGTCCCTGGTGGCTCCCCCGGCCCCGGCAGGGCGCAGCCCACGGGGCCCCACACCCATGTCTGCAGCCAGAGCCCTGGGCCACCACTTCATGGCCAGCCTTATAACAGCTGAAACCTGTGCTAAGCTGGAGCCAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000031544-NR2E3:NM_016346:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.720
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGGGGCAGGGATG
R:
GTGTTGGACTCCATGCTGTCC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)