MmuINT0110509 @ mm9
Intron Retention
Gene
ENSMUSG00000032292 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
Coordinates
chr9:59796410-59796835:-
Coord C1 exon
chr9:59796732-59796835
Coord A exon
chr9:59796632-59796731
Coord C2 exon
chr9:59796410-59796631
Length
100 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GAGTCTCCCTGCTTTCCAAGCTG
3' ss Score
4.03
Exon sequences
Seq C1 exon
GTGCCAAGTCGGGGCAGGGATGTGCCCAGTGGATAAGGCCCATCGCAATCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATG
Seq A exon
GTGAGTGGTGGGCACGGTGAAGTGGGAAAGGCAGGAGAGAAAATGGCATCACTGCCAAGGGGCAGGTGCGTGTGTGTCCTGAGTCTCCCTGCTTTCCAAG
Seq C2 exon
CTGTGCAGAATGAGCGCCAACCTCGGAGCATGGCTCAGGTCCACCTGGATGCCATGGAAACAGGCAGTGACCCCCGATCAGAACCAGTGGTAGCCTCTCCTGCTCTGGCAGGGCCCAGTCCCCGGGGCCCCACGTCTGTGTCTGCAACCAGAGCCATGGGCCACCACTTTATGGCCAGCCTTATCACCGCCGAAACTTGTGCTAAACTGGAGCCAGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032292-Nr2e3:NM_013708:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.707
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(46.5=91.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGAAGAAGTGCTTACA
R:
TTTAGCACAAGTTTCGGCGGT
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: