HsaINT1025283 @ hg38
Intron Retention
Gene
ENSG00000278570 | NR2E3
Description
nuclear receptor subfamily 2 group E member 3 [Source:HGNC Symbol;Acc:HGNC:7974]
Coordinates
chr15:71811766-71812176:+
Coord C1 exon
chr15:71811766-71811869
Coord A exon
chr15:71811870-71811954
Coord C2 exon
chr15:71811955-71812176
Length
85 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
GACCCTTCCTGCCTCCCCAGCCG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTGCCAGGTGGGGGCAGGGATGTGCCCCGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCCTGCAGGCGGGGATGAACCAGGACG
Seq A exon
GTGAGGCGGGGGCTGGCCCGGGGGGAGGTGACAAGAAATGGGCAGCGGGACTGGCGTGTCGTCCTGACCCTTCCTGCCTCCCCAG
Seq C2 exon
CCGTGCAGAACGAGCGCCAGCCGCGAAGCACAGCCCAGGTCCACCTGGACAGCATGGAGTCCAACACTGAGTCCCGGCCGGAGTCCCTGGTGGCTCCCCCGGCCCCGGCAGGGCGCAGCCCACGGGGCCCCACACCCATGTCTGCAGCCAGAGCCCTGGGCCACCACTTCATGGCCAGCCTTATAACAGCTGAAACCTGTGCTAAGCTGGAGCCAGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278570:ENST00000617575:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.729
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(46.5=91.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGGGGCAGGGATG
R:
GTGTTGGACTCCATGCTGTCC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains