RnoINT0103727 @ rn6
Intron Retention
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7746798-7752862:-
Coord C1 exon
chr3:7752836-7752862
Coord A exon
chr3:7746900-7752835
Coord C2 exon
chr3:7746798-7746899
Length
5936 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CCATTTCTTATCTCTCTAAGCTG
3' ss Score
5.13
Exon sequences
Seq C1 exon
GTGCAGCCGCAGGCTCCGCCTTTGGCA
Seq A exon
GTAAGTACCTTGCTCTGTACAAGACTCTGCAGCCGGGCCTGGAGCTCGGGCATGAACGGGCTGCTGTCTGTCGGGGCTACCTCTCTATCTCTCTTCCATGTACCCTATTGTACCTAAGCACACCCATCTGCCTCTCCTGCTCATCTCAGGTTTCCTAGGAACTTTCTTATGCTGCTTTGAAAGAGGAACCGGGCTTTTGTGTGATTTAGTTCCCTGACCCCTGAGTGGACAGACCCCCCCTGTCTCCTGAGTGGACAGACCCCCCTGTCTCCTGAGTGGACAGACCCCCCTGTCTCCTGAGTGGACAGACCCCCCTGTCTCCTCACACTCTGTTCTGTCTTTTGTGCACAGCCAGAAATAGGGGCCTTCTGTACTAGAGCAATGCCTGTCCCCTGAGTTTGACCATTTGGTACCTCTCCAGGCAGCCTCTGAAGCCAGTTTGCTCTGCCACAGGCTGGAGGGGGCAAGTCTGATGCCAACCCTTCTTTGTATGTCTAGGGCATGTCAGGCTGGGGAGGGGCATCTGCAAGAGTGCAGGTGTCGTAGAAATCCCAAGGATGGTGAGGGGCTCTGATGTAGGTGCCTGTTGACTCCCATCCACATGGTCCTCCCAAGCATGTAGTGGGGCCAGGTGGCTGTGCATGGCAGCATCTCATTTGGCATTGCAAACATAGCCCCTGCCCCAAAGCATCTTCTACTACTCCCAAGAGTCAGCAGGAAAGGGCTTGTCAGTGTCAAACTGTGGCAGACCCTGAGCCTTAAGGATGCTTCTGAGGACTTCATCATGTTTCTGTGGGGACACACCCTGCCCCACTGCCTTGTCTCAAACAGCCTGGGATGCTAGCGGGCAGAAGGAAACTGGACTCTAAGCGACACTGGCCCCGACATCAGAGTAAGGGAAGGAGTCTCAAGATGCCCCACCCACCCTTTCTTACTTTCTCCATGTCTTGCCAGGTACCAGCAGGTCCAGAAAAATCCCTGCTCCCAAAGCCCCTATGGCCACTGAGGCCACAAGGAGGGGCCCAGTCACTTCTATTCCCTCCACATCTACCATCCAAGTCCCTACAGCCCCAAGCACCCCGCACCCCACAGGTAGGTATGACAGTACACCAGGGATGCCCGCCCCTTCCCTTCTTGCCTTCCTCACCTGGGGAGACCAGGCGCCTGCCTCTTAGAGTAGAAACTGCTAGCATCTAGCCCCATGAAAGCACTGACTGAGGGGGTCCCCAGGCTGTGTCAGGAAGCCATTCCATCAGGAGTCCTAGCCAAGGCAACCCCTGACACTCCCAGAATTGTCTTGTTTGTCCCGCCAAGCATTGTAAAGAAAGGCCCAGAGGCCAGTGTAGCGGAGGGTACAGGGACCTTGTAGGAGGGTGCCCATGGCAGCAAGTCCACCCAGATATTCAGCCAGAGACAGTTCTTTGTCACTCAGACATGGTTTGTTGTGTGTCCATGGAGCTGGCTCAGGATCTGTCCCCAGTTGGTTCACCTACTGGGTCCTCTGTCCAGGTGCTGGCCAGGGGGGAAACAGGGCTGGATTCGTAGAGATCGTGAGACAGGCCCAGGCCAAATTCCTGCCTTACAGAAGATCTACATGTGCATATACACACAGGCCTACAGACTTGGCTGACTCTTTGCCCTCCTGAAGCAGGATTTGTGCATGCAAGTGGTATAGGTTCCTGATGTGGCCCTCTGGACTCACCTGGGAAAGTCTTACCAGGTCTGGTCCACTGCAGATGCTGGGAATCTGAAACGATTCTTCCTGCCAGAGGGTACCAGCAAGATGGTGGCCAAGTAGCTTTCTCCTGGCTCCAGCAGCCCATCCCTCCCCAACCCTTTCAGGGGAGACCTGGCTGAAACTCCTTATTCCTTGGATAGTCCTGACCTTTCTTCTCTTTCATTCATTGTCCCTGACCAGACACCCCTTGCCCCATGGTGGGCAACATCTGATAGAGATTCCTCAAGCAGTTGAGGAAGAGGTCAAACCCCACACTGTCCTATCTCTGTCTGCTTCACAGGGTAGCCTCTCAGGTCAACAGACAGCCTTGAGAAAATCACCTTCCCAGGACCACACCACAGGGGCTCTCCCTGAACCTCTCTGTGGGGAATTGTGTAGGGAGCTGAATCAGGAGATAAAGACTTTTAGGGGAAACCTTTGTTGTCTGGGGTCCCTTTGAGGTGGAGGAATCTGGGCATTGAAGCTTAGCATCCTGGGCCTCCTTCAGAGACCTTTGGACTTTACTGAACCTGTGATGGTGGGGGGGGCAGAAATAAGCAGAAAGGGGTGGGGGCTTCCACCTGACGCTGAGCAGTGGTCCTCCTAGGTGGGAGACAGGCCCTGACTGTCAGGTACTGAGAAACCTTGAACCTACCTGGAAGCTGCCTTCGTGTAAATGTTGTGGGGCAGAGAAGGCAGAGGGGGGCCAGTGAGCTCTCTCCAGAGGTGGGGCCTGAGTTCTGAAACTCCCCCTGGGTTACAGAAGTGGCTGATTCCAGAACTTTGCTAGTGAGCAGGAGGTATGCCCATCTTCCAGGCAAAAACAGCAAACTTTCAATGACTGTCAGATCTGCAATTCTGAGCCCCGTGCTGGATGGCTGAGCATTGAGGGGAGGAAGTGGCTTCAAGGTAACAGCCAGCAGCCTGCATCTTCCGCATCTAGGTCATCCTTAGCTCTTGTGTGGCCTGTGCCCAGAGTCCCCGGGACACTTGGCATACCCTTGGTATGGGTCCCAGTTGCATGCAGGTGTCTGGCCGGACAGTGTTATCTTGCTAGTCTCACTGGAGGAGAGGACGAAGGCTTAGGAAGAAGTTGCTGCATCTATGGTATGCAAATTATACCTCGATAAAGCTGTTTTTTTAAAAGACAGAGAAAAGACAGGAGAGGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGCGAGAGGGAGAAAGAGCTTCCCACGGTCCCAGGAAATCCACAATCCAAGCAGGAGCACAGGGCTGACTCACTCCATTCACTCCCTGTCCCCTCTGCCATTCAGAGATACTGCCCTGAAGTCTCAGGTGCTTAGAGGTGATCCCACCATTAAAACCCAGCTAGCATGGGTTCTTGGTTCCAAAAGACCTTCTGTCTAGTCTTGGCACACAACACAGGACACCTGAGCATGTCCTAGCAAAACGCAGCCACAAGTTTTCTCTTCCTGGACCCAGCGCCTTCCACCGGGTTCTCAGGCCTCTTTAGCTACAGCCCAGCTGGGCCCTGAAACCCCAGCCCCAGATGCTGTCTGGAAGGCAGTGCTCTCCTGAAAGCCAGGCTAGAGAGCCAAATCCGTCCCAGCCTCCTCAAGGGGGTGGGGGAATCCAAGCTCAGAAGCAAGATGCCTTCGGGGTGGTTTTACCAGGGCTCTAATTAAGCCCTTGCCAATTTGGGTCCTGCGGTCTTGTCTCTTCACTGAATACTGTATTAATGTCAATTTGATGTCCAAAGGCTTCAGGCTCCCAGCTGGGAATCTCCCGCCATTTTTTTACCTAGTAGAATTTCTTTTTCTTTCTCCATCAACCACCACAAATAATCCCTTTCCAGAGGGGAAGACATCAACTTCCCCTGACCCCCCACCCCCACAATCTTCTCCCAGTTCTGTCCTTTGAATTTGACAAAGCGAATACTGCCTGTGCTCCTTGCTCTGGGAACTGAATGTTGGGGATGGGGCAGTTGGTGTCTCAAGCCAAGGATCAGGAGGTGGAAGGGCAGTGATCAGAAAGGAGAATTAATTAGACATCCGAGGACACTCTGGGGAACCTTCTAGAACTTTTCTCAGTGTGTCTATCACCCTGGCCAGGACATCATCCCCCAGCACAGCATTGGAATGTGTCTTCACACACAGGACCTGTTCTGGCTGTTTAACTGGAACAGAAACCATCCAAGGAGGGAAGGGTTTTCGAAAGCAGTGCCCGGTGAAGGAAGAACTATTCAAAGCCCACAGAGCCTCAGGCATGGGGGCCTCCTCTCATCAGTGTGCGCACGTCCTCTGCAGCTTCAATAGTGTAGATGCTGCCTCTGTAGTGAGTTTGGACCCTGGTAGACAGAGCCTGTGGTGCTGCCTCTTACAGGAGCCTCTGAAGGGTAGGGACATCATCCCTCGAATGACTTGATTTCTTCTCTTCTTCCTCCCAAGGTCAGACCAAACCAACTACTGTGGCACCCCTTGGGGACAGCTCCTTCTGGCCCCAGGTGTCTTCCAGTGCAGAAGGTATGGGGGCAGGACCTATGGCAGGCCTGAGACCCCAGGAGCTCCATTTTAGACCTTCCCCCTGTAGTAAGGGTAGCAGGGTGGGGGAGGACTGAAAGGGAGGGGGCAGAAGTTAGAGTGAAAGCACTGAGACGAAGAACCCTTACCCTTACTCCCAACTTTGCCTCTACTGGAAGCCAGTACGTAACATCTCTAACCCTTTTCCGAGAGCTTCAGAGGGTATGGAAGGACGTTCCTCATTCCGGAACCTCTCTTCTCCCTCCTCAATATGTGGGTCACATGTGGGATACCTAGGCAGCTGGTGAAGCCCAGAGAGGGTCAGATGGACTCAAAATAGGTGTGGCTGTGAGTAAATGAAGGTGGCAGAGGAAGCCTGAGGCAAAGACTTGTCAACCTAACAAAACCCTTGTCAGTGAGGGTATGAGCCATATAGAAGCCCCCGGGACTAGGTCAAGAGAATTAATTGTTCTCGAACTGTGGGGAAACACCCAGGACAGGGGGCTCGCCTGTAGCCATAGATGGATGTGGATATACCTGGGCTAGCTTGACTCCTCTGAAAGGAAGGTTGTCCTAAGTTGTTCCTAGTTGACCTGTTCTCTGTCCTATTATCCTTGCCCCACCCCATTCAACATCAAAAGTTCCCCTCCATTACCCTCCCCATTGAAAGAATGAGCAGTGAGCCGGGCTTTGAGCGCCCTCTACTGGCAAATGTTTGCACAACTAGTGGGGTCAGACGTTCTTTTAGCATCCTAGAGGTTCCTCAATCAACACGTCCTCTCTAGAGATGAATACACGAGTCATCTCCTGCCCTGGCCCACTAAAAAGCCACAGAGTCCTAGGGGGAAGTACAGAGCCTGTGTTCTCTGTGATAATGGTGTGCTTACCTTCAAGAATGGACCCGGGCCCTGGTGGGATTCCAGGCAGGGAAGGATACTGCTGCTGCATTCTTGGCTTAATGACACTTTCAAGGACAGCAAAGGACCCACCCTAGCTAGAGCAGAAAGATGTCCTCTGAGGGGAAGAAGATGCAGTCTTAAAAATATTTAACATACTTATTTTATGTGTGTGTTTTGCTCTCATGTGTGTATGTGCACTACGTTTGTGCCCGGTGCCTATGGAGGTCAGAACACCGGAACTGGAGTTACAGTCAGTTATGAGCTAACACACGGTGCTGAATCCACGTCCTAAAAACAACAAGCACTCTTAAGCACTGAACCATCCACCTCTCCAGTCCCAAGATACAGTCTTTAATGCCAGGTTTAGACTGGAGATTTGACCAGGGGAGATTGGGAGACAGAGAGAAAGGGCAGAAGTGCGGTGCCATTTGCTTTCAAACAGCCACATGTCTCTCAGTGTCAGCAAATGACAAAAGTGTCAGCAAGTAGAGGGTGTTAAGAGCAGGAGAAGGTAGTTGGGGGTTGCTCCAGAAGATGTGTAGGTGTCCTCGGGGAACCAGAGACAGTAAGTAGCTACCCACTGTCATGGCTACAAGATGCTTCAGCCTGGGACTCTGAGAAGACCCACACTCTACACCATGTAGTCTCTCCCTACTTAAATGTGAACAGGTAACAGGGTTGCCTGGGACTGACCCAAGGCACTCCGAAGCCTTGATTTAGCTTCTCCCTTGGTGATAGCTTCCCTGGTGGCTGGACCATGGCAGGTATAAGAACCCATTTCTTATCTCTCTAAG
Seq C2 exon
CTGTGACTATCCCTGTCGCCATCCCTTCCCAAGCCAAGGACTCTACACTTTTCCAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694:ENSRNOT00000045919:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]