RnoINT0105357 @ rn6
Intron Retention
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212805784-212806542:+
Coord C1 exon
chr1:212805784-212806089
Coord A exon
chr1:212806090-212806224
Coord C2 exon
chr1:212806225-212806542
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCAGAGTTTCTCCCTGTCAGGTC
3' ss Score
6.9
Exon sequences
Seq C1 exon
AGTTCCGACTGGTGAATGGCAGCAGCCGCTGTGAGGGCCGTGTGGAGCTTTTGGTACAGAATGCCTGGCAACCCCTCTGTGCTGCTGACTGGGACTTAGCAGATGCCACAGTGCTCTGCCACCAGCTCAATTGTGGCTATGCAGTTGCCACGCCCCAAGGAGGTCACTTTGGAAATGTAGAGGCTTCCATCAGGACAGATGTATTTCACTGCGTGGGGACAGAGCCCCACTTACTGAGCTGCCCAACAAGCACCTTAGGGGCCCAGGCATGCACCCTGGGGAATTCAGCCTCAGTTCTCTGCTCAG
Seq A exon
GTGAGTACAGGTGGCCTTGAGACTGGGAAGAAGGTAAACAGGACTGGTGGATAGAGGTGTGAGACATTCAGGAGGGTGAGGGTAGGTGGGGCTCCTTGCAATGGTCCTCTGCCCTTCAGAGTTTCTCCCTGTCAG
Seq C2 exon
GTCTCCAGGATGCCCTGCGGCTAAGGGATGGAGAGAGCTACTGTGATGGCCGAGTGGAGGTCTTCCTGGATGGCACATGGGGGCGTGTGCTGGACAATGCCTGGGACCTGCGTGATGCTGCTGTGGTGTGCAGACAGCTCGGGTGCGGAGAGGCACAGCTAGCCTATGACTCACCAGCACCGGGTTATAAGGCAATTCCTGTGGGGCTGAGCCTGGTGCACTGCTTGGGCACTGAGACCCACCTGACCCAGTGCAATGTTTCGGCTTCTTTGCTGGTCCAGGCAGGGACGTTGCGGGATGCAGGCGTGGTGTGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647:ENSRNOT00000025680:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAGCAGATGCCACAGTGC
R:
AGCTCTCTCCATCCCTTAGCC
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]