RnoINT0105359 @ rn6
Intron Retention
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212806622-212807327:+
Coord C1 exon
chr1:212806622-212806936
Coord A exon
chr1:212806937-212807012
Coord C2 exon
chr1:212807013-212807327
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
ACTGGGCCCTCTGTCTGCAGAAT
3' ss Score
10.56
Exon sequences
Seq C1 exon
GGAGCTTACGCATACGGTTGGCAGCGGGCAAGAGCCGCTGTGCTGGGCGTGTGGAAGTGTTCTATCAGGGCTCATGGGGCACCGTATGTGATGATGCCTGGGACCTGCAGGATGCCCATGTCGTGTGCAGGCAGCTGGGCTGTGGCCATGCCCTCAGTGCCCCCAGGGCTGCCCATTTTGGAGCAGGAACTGGGCACATCTGGTTGGATGAACTGGGCTGCCTGGGTGAGGAGGCTGCTCTATGGGAGTGCCAGTCAGGAGGTTGGGGCAAACAAGACTGTGGACACAAGGAGGACGCAGGTGTGATCTGTTCAG
Seq A exon
GTAGGTGCCACAGGTCTCGTTTGACATGACCAGCCCTCCCTAACTGTGCCTGCCTGACTGGGCCCTCTGTCTGCAG
Seq C2 exon
AATTCACTGATGTGAGGTTGCAAGAGCACAGTCAGCCATGCACAGGACGCCTGGAGGTTTTCTACAATGGGACCTGGGGTGGTGTCTGCCAGTCTTTGAATGCTGCCTCCCTGAGGGTTCTGTGTGAACACCTGAACTGTGGGTCTCAAGGGCAGCTACTGGCCAGGCCAAGGAGCTCATCTACCATCGAGACTGTCTGGCTGAAGTCTATTCAGTGCAGGGACAAGCATGACAGGTCCTTGTGGCAATGCCCATCAGCACCCTGGAGAAGGCATTCTTGCCTCCGAGGAGAGGAAGCTTGGTTGGTATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647:ENSRNOT00000025680:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCAGGTGTGATCTGTTC
R:
TGAGACCCACAGTTCAGGTGT
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]