RnoINT0106582 @ rn6
Intron Retention
Gene
ENSRNOG00000012750 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:RGD Symbol;Acc:1563142]
Coordinates
chr3:160432249-160442144:+
Coord C1 exon
chr3:160432249-160432365
Coord A exon
chr3:160432366-160442037
Coord C2 exon
chr3:160442038-160442144
Length
9672 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTTTCTTTCTTTTTTTACAGTTA
3' ss Score
11.68
Exon sequences
Seq C1 exon
CTACCTGCCCTCCAGCTGCCTCGGTGGTCCAGCCTCTAAGCACGGCACCGCACCCCTGTATCCACCTCAGCAGTGCCAGCCAGGCCTCCAGCCAGGTGCCTCACACGCAGAGAGTAG
Seq A exon
GTGAGTGTGTAAGTGTGAACATCCCAGGATTCGGAATGGAAGGGTGTCAAAGAGTGAGAAAACCGGGGTTTGGCAGAGGAGGTAAGATTAGACCAGGCTCCATACTGACCTTGCTTTCCTAGTGAGCCAGGCCAGCTTTGGGGGGTATCCGTAACATAAGTGTTAGCATGGCATCCAGCCTGAGTGTCACTTTGTGACCCTTGTTGATTGCTATGTCTGCTGATTTAATCTTTAAAACAGGGATTAAAAAATAGTGTGCCCACTTTGTTGGGAGGATTGGTGAGTCCAAAATGGAAGGACTTGAGTCTTAACAAGTATGGAAGGTACTGTGACTTTAGAGACAAGTGTATCTGTGGGCCATATCCTCGAACCCATGAGCTCGGCATGCAGGAGGGGCTGTTCTTCAGGGATTCTGCATAATGAGTCAGATGAAACCCCCAGTCTTCTGTCGCTGCCAGGTTTCGACACCCAGGCTCATGGTTATAATCTTGAACGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGTGTAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAGAAAAAAAAAATCTTGAATTGTTGTAAAACACGCACAACCTCTAATTGACTGCTTCACTGTCTTTTAAAGATTTATTTATTCTTATTTTATGTGCACAAGTGTTAGTCTCCACATATGTATGTGGAGTTTGTGTGCGGTGCCCATGGAGGTCAGAGGCTACCCTGGAACTAGAGTGACAGACGGTTTTGCTTTGCTGTGTGGGTGCTGGGAAGTGAACCACGGTACCCTGCGAGGACAGTGAGAACATTATTGTTTGTAAGCCTACAGTTTAGAGGCATCCAGGCCGTTCACAGTGCTGAGTACGGTCTGCAGCCATTGCCTTGAAAACAAAACTTCCCATTAGCCAGTTCTTCAGTCATAAATTCTTTCCAGCCTCTGACAAACAAACCCATCCCGTTTTTGCCTCTTTGCATTTGCGCTTGATCTTAGCCGCAAGGCGGGAAAGCCGACGTCCCTATGACTCTAAGTATGGTTGCATCATGTGAGTAGCTTTGGACTCTTGGTGCTTTGTGACTCGCTGTCACTTAGCACACCGTGCTCAAGATTCAGTGATGTTCCCACAGGAGGCGGTGTCTGCACATGTAGATTCTGTGTCTGCACAGGTAGATTCTGTGTCTTTTGGCTATGCACTCACCCGTCGAACACACGGATTGCTTTCGCCCGTGGGTTCTTGTACATGGATATTGCTACTATGAGCACCAGTTTGCAGATTATCTCGAGACTTTGTTTCCAATTCTTTTGAGTACTACTCATCCAGAACCCAGATTGCTGGATGTGTTGACCCCATGTTTAATTCTTCGAGGAACCCCGTATTGTATTTCTAACAGTTGCTGTATACCCAGCATTCCTGCCAGCAGTGCCTACACGTCCCAATTTCTTTACCGATTCACCGAAATTTCCTATGTATTTTTTTTCTTTTTTAATTTTATCAGATAAAATTACATTTTATTATAGTTTGGTACTTTAGCTCTAGTTTGAAATTGATATATTAATTTTTTTTATTAACTTGAGTATTTCTTATATGCATTTCAAGTGTTATTCCCTTTCCGGTTCCGGGGCAAACATCCCCTAAATCCCTCCCCTCCCCTTCTTTATGGGTGTTCCCCTCCCATCCTCCCCATTGCCGCTTCCCCCCAACATCTAGTTCACTGGGGTTCAGTCTTAGCAGGACCAAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACTATGAGGTTTAGAGTCACAGGGTCAGTCCATGTATAGTCTTTGGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCACTGTTGTACATATGGGGTCTCGAGCCCTTCGAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAATGGAGGTCTTGTTCTCAGTTCAGTGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTCCAGGAGAGATCTACATCCGGTTCCTTCAGCCTGCCCTTTGCTTCATCCACCTTGTTAATTGGATGGCTGTATATGTATGGGTCACATGTGGGGCAGGCTCTGAATGGGTGTTCCTTCTGTGTCGTTTTAATCTTTTCCTCTCTATTCCTCGCCAAGGGTATTCTTGTTTCCCTTTTAAAGAAGGGAGTGAAGCATTCACATTTTGATCATCCGTCTTGAGTTTCATTTGTTCTAGGCATCTAGGGTAATTCAAGCATTTGGGGCTACATAGCCACTTATCAATGAGTGCATACATGGTGTGTTTTTTCGTGATTGGGGTACCTCAACTCAGGATGATCTTTGTCCAGTTCCAACCCTTTGCTAGAATTTCATAAAGCATTGTTATTTTGATGCTGAGTAATATCCATGTATAGATGTACCCCATTTTCTGTATCCATTCTCTGTTGAAGGGCCATCTGGGTTCTTTCCAGCTTCTGTGTATTCTTAAATACGGCTGCTATGAACATAGGTGGAGCACGTTTCTTTTTTATATGTTGGGGCATCTTTTGGGTATAATGGCCAAAGAGGTATAGCTGGATCCTCAGGCAAGTTCAATGTCCAATTTTCTGAGGAACCTCCAGGCTGATTTTCCAGAATGGTTGTACCAGGTCTGCATCCCACCAACAATGGAGGAGTGTTCCTCTTTATCCCATCATCGCCAGCATCTGCTGTCACCTGAGTTTTGATCTTAGCCATCTCTCACTGGTGTGAGGTGGAAATCTCAGGTTGTTTTGATTTGCATTTCCCTTATGACTAAAGATGTTGAACATTTCTTTAGGTGTTTTCTCAGGCTATTCGTCATTCCTCAGCTGTGAATTCTTTGTTTTAGCTCTGGAACCCCATTTTTTATAGGTTATTTGTCTCCCTTGCAGTCTACTTTTGAGTTCTTTGGTATTATTTTGGATATACAGGCCTCTATCTGTTGTAGGATTGGTTAAAGGATCTTTTTCCCATCTGTTTTGTTGCCTGTTTGTTCCTAACCACAGTGTCCTTTGCCTTACAGAAGCTTTGAATTTTATGAGATCCCATTTGTCGATTTTGACTTAGCGCATAAGCCCATTAGTGTTTTGTTCGGAAATTTTTTCCAGTGCCCATGATGTTCCAGATGCTATCCCTAGTTTTTCATTCTATTTGTTGGTGGTATCTGGTTTGACTGTGGAGGTCCTTGATCCACTTTGACTTAAGTTTTACAGGGTGACTAAGCATGGATCGATCGTGCATTCTTCTACATGTTTGCCCTCCAGTGAACCAAGCCCTTTGCTGAAAATGGCTTATCTTTTATTCATTTGATGGTTTTGGCTCCTTTGTCAAAATCAAGGTGACCATAGGTTGTGGGTTCCATTTCTGGTCTTCAATTTTCTGTTTCCTTCTGGTCTATCTGTCTGTTCTGTACCAATACCATGCAGTTTTATCACTTAGTTGCTCTATAATACTGCTTGAGTTCAGGGATAGGGTTCCCCTGAAGTCCTTTTATTGTTGAGGATCGTTTTGCTATCTGGGTTTTTGTTATTCCAGATGAATTTGTAATTGTTCTGTCTAACTCTTTGAGGACTTGTATTGGTATTTGATGGGGATTGATTGAATTGTAGATCTGCTTTTGGTAAAATGGCCTCTCTTTACTATATTAATCCTGCCAATCATGAGGATGGGGAGATCTTTCCATCTTCTGAGGTCTATCCTTCAATTTCTTTCTTCAGAGTCTTGAAGTTCTTTATATGTACAGATTTTTTACATTGTTGGTTAAAGTCACACGAGGATACTTATATTATCTTTGGGTCATATTATGAAGGGTGTCGTTTCCCTAATTTCTTTCTCGGCTGTTTTCTCTTTGTTGTAGAGGAAGGCTACTGATATTATTTGCGTTAATTTATACCCAGTCACTTTGCTGAAGTTGTTTATCAGCTTTAGTAGTTCCTTCTGGTTGAACTTTTGGGATCAACTTAAATTATACTATCATATCATTGCAAAATTGTGATATTTTGACTTCGTCTCTTTCGATCGGTATCCCTTGACCTCCTTTTGTTGTCTGATTTGCTCTGGCTAGACTTCAAGAAACTATATTGAATAAGTAGAGCGTGTGGGAGCCTTGTCTAGTCCCGATTTTAGTGGGATTGCTTAAGTTTCTCTCATTTTAGTTTAATGTTAGAAACTGGTTTGGCGTATATGGCTTTTACTATCTTGGGTATTGGCCTTGAATTCCTATTCTTTCCAGATTTTATTCATGAAGGGTGTTGAATTTTGTCAAATGTTTCTCAGATCTAAGAAAATGATCATGTGGTTTTGTTCTTTCGTTTGTTATATAAATGGATCACGTTGATGGGTTTTCCGTATATTAAACCATCCTGCATGCCTTGGGATGAAGCTACTTGATCCATGGTGGATGATTGTTTTGTGTGCTCCTTGGATTCGTTTGCCAGAATTTTTTGAGTATTTTTGCGTCGATATTCATAAGGGAAATTTGGTCTGAAGTTCCTCTTCTTTGTTGGGTCTTTGTGTGGTTAGGTAGAGAGTAATTGTGGCTTCATAGAAGGAATTTTGGTAGTGATCCATCTGTTTCAATTTTGTGATATTTGGATAATTTTGAGTATGGAGGTCTTCTATGAAGGATCTGATAGAATTCTGCAGTAAACCCGTCTGGACCTGGGCTCTTTATTGGTGGGAGACCTTAATCTGCTTTCTTTCCTTAGGAGTTATGGGATTGTTTAACTGGTTTATCTGTTCCTGATCTTACTTCGGTACCTGGTATCTGTCTGGAAATTGTCCATTTTCCTGCAGATTTTCCAAGTTTTGTTGAATATGGGCTTTTATAGTAAGATCTATGATGATTTTTTTGAAGTTCTTCCTGAATCTGTAGTATGTCTCCCTTTTCATTCTGATTTTTGTTTAATTTGGACACACTCTCTGGGTCTACTCGTTAGTCTGGGCTAAGGGTTTCTATCTTGGTTGATTTTCTCAAAGACCACTTTTAGTTCTGTTGATTCTTTTCTATGGTCCTTTTGTTTCTACTGGTGTGATTTCAGCTCTGAGTTTGGATTATTTCGTGCCTTCTACTCCTCACTGGGTGTATTGCTTCTTTTTGTTCTACAGCTTTTAGTGTGGCTGTCAGCTGCTGACATATCTCTTTCCTGTTTTCTTTCTGGCAGGGCACTCAGCTCTATGAGTTTTTCCTCTTTAGCACAGCTTTCATTGTGTTTCCATAAGTTTGGGTATGTTGTACCTCATTTTCATTTAAATCTCTAAAAAGTTTTTAATTTCTTTCTTTTTCTTCCTTTGACCAGGTTATCATTGGAGTGAGCATTGTTCAATTATCCACGTATATGTGGGCATTCCTTCCCTTATTTGTTATTGGTAAGGACCAGCTTTAGGCCGTGAGTGGTCTGATAGCACGCATGGGATTATTCTCTCCTTTCTGTACCTGTTGACTTGCCCGTTTTTGTTGACCAATTANNNNNNNNNNNNNNNNNNNNNNNNNCTGTCTTCAGACACATCAGACGAAGGCATCAGATCTCATTACAGAGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGAGCCATCTCTCTAGCTCCAGCTGTTTCTTTCATAGATCATTTTATATCTTATTCGGGAAATAAAGTATCTAAAAACTTAACATTTCTTTTACAGGGCTGAAACTCAGAAAGTATGCGTAAGATCTACGTGCCTTTGCTTTCTGTCTTATGTGTCACAGTCAACTGTTACCACGACCAAGTGTCAGGTGCAAGTCTGAGAAGGCATAAATACCAAGAGCAGGCTGTACAGAAGAAAACCTTTTAATGCAACCACAACACACACACTTCAATAAAATCAGTTCAATTAACTTCAACATATTAACAAAACAAAACAAAGAAGCCTGAGGGGCTGCTGTTGGGGGAAAGGGTTAAGTTCCTGCTCAGACTGGAGGGACACTAATCTCAAGGAGGCCTCGCTCCCCATCCCAGGAGGAATATGGGCTCTTTGAACATCGTAGGTAGCTCATACAGAAGGCAACAGCACAGAGCCTCCAAGGGTTAGGCTCTGCCTTCCCACAAAGGGCCTGGACTAAAGGCACTGGGGCTCAACACAGGACACTGTGCCAAGGACAGGGTGCAGATAGCAGCTGTACCCTTGGGGAGATGGCAGCCTTGGAGAACCAGCTCAACAGGCTGCGTGGGTGTAGGGAGCAAGCACTTTAGCCTGTCAACAAACACTACTCTCCCAGCTCAGGTGAACTGCAGAGGCATGGTTCTGGGAAGCCACAGGGCACTCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGCTGATGCCCGTGGAGGACAGAAGGTGTTGGAGCCTCTGAACCATCACGTCAGTACTGAGAACTGGAACTGGTCCCCTGGAGCAGTCAGTCCTCTGATGAGCTATTCTTCAATTCCCTACCCTTTTCTGCAGATGCAAAGGCTATGAGAAGCTTTCCACAGTTGGCTCTGGAGTCAAGGGACTTGCTCAAGGGGGTAGCGTCAGTGAGGGGCAGTGAGTCTGCACAAACCTAGAGCCTGACCCAGCACCACACTGACACTCACCATCCTGTATCAGGTTCTTTAAGCAAACAAGTTTCCCAAAACCTTCCCCTCAACAGATGGAAAAAAGTCAAATGCACGAGTATTAAATACTAGTTAGCACTAAGCATGCGGACATCTCAGGGGTGGAGTGTACAGATTTAAGCAATCACTTGGGAACACATCACCAATAAGATGGAGGTCTATGTTAAGCATGGATAGGGTCCCCAGCATCATGTAACTACTGGAGAATCTGATGGTGGATAGATGGGTGTTCTTGAGACTTTGAAATTCCTTATAATAAAATGTGGGAAATACCCCGTGGTTTAACATCATTTAAGTCTGCAGACTAGAGGACGCCTTTCGGCTCCGCCCACTCATCGTCCCTCACTGCTGAGTGGATGAGAGCACTGGCTAGATGGACACGGCATCGTGTGCTTTAGCAACTCCCGCCCTGCATCCATTTTCACGGTTTGCAGTGTGTGCAGTCCAGACCGCTGCAGGGACGGCCAAGCGATCCTGACAGCTCGGATTCCAACTGTAGTGCCAGGCACTCTGAAGAACTTACCAAGAGTCTCTTCCCCTAGAATTTTATCACTCCTGGGTCTCAAGCCTTAATGTCTGTTAGGACGGAAGGCGATGGGAGCCAAAGTACTTTAGCTCCCTCCGGTCCTTAGTTCACACAAACATGAAACGCTGGGCCTCTTTCACAAGGCATTTAACATTACAGAANNNNNNNNNNNNNNNNNNNNNNNNNAGGCGTGGAGGCAGGATGGATATTCTAGGGAAATCTTCAGGCTCTGAGCATTCTTCGCTTCCAGTCTGCTTGTATTCTGTTGGTGAAGCTGTGCAGTCTACAGCGCTCTTGTCTCTTTCTTGTTGGTGTTTCTAGTGACCAGGTTGTTTTACCCATGTGTTCTTTCGTGTGGATTGCTTCGGATTGTCGCAGTTTTGTAATCCTTTAACTGTGTTGGATTGGTGTGTCTTCGCGCGGTTTTCCTGGAATTCTTTCAGGGATTTTTGTGACTCTTTTGTATGGGCTTCTACTTGTTTATTTATGTTTCGGAATTCTTTTTAGAGATTTTTGCGATTCCTCTCTGTAGGCTTGTACTTATTTCTCTAAGGGATTCTTCACGTCTTTCTTGAAGTCCTTCAGCATCATGATCAAATATGATTTGAAACTAGATCTTGCTTTTCTGGTGCTGTTTGGATATTCGTGTTTGCTTGGTGGGAGAATTGGGGCTCAATGATGCCATGTAATCTTGCGCTTTCTGTTGCTTGGGTTTCCTGCGCCTTGCCTCTTGCCATCAGATTATCTCTAGTATTACTTTGTTCTGCTATTTCTGACAGTGGCTAGACTGTCCTATAAGCCTGTGTTTCAGGAGTGCTGTAGACCTGTTTTCCTGTTTTCTTTCAGCCAGTTATGGGGGACAGAGTGTTCTGGCTTTCGGGCGTGTAGTTTTCCTATCTACAGGTCTTCAGCTGTTCCTGTGGCCTGTGTCTTGAGTTCACCAGGCAGGTCGCTTTGCAGCAGAAAAGTTGGTCTTACGTGTGGTCCCAGGCGCTCAAGTTGCTCGTGGGGTGTTGCTTATGAGCTCTCCGCGGCGGCAGCCACCAGGAAGATCTGCGCCGCCCTTTCCGGGAGCTTCCGTGCACCAGGGTTCCAGATGGCGTTTGGTGTTTCCTCTGGAATCAGTAATGTGTGCAGAGTGCAGTCTCTTCTGGCTTCCCAGGCGTGTCTGCCTCTCTGAACGGTTTAGCTCTCCCTCCCACGGGATTTGGGTGCAGAGAACTGTTTATCCGGTCGGTCCCTTCAGGTTCCGGCGGTGTCTCAGACGCAGCGGATCTGCTGCTCCTGGGCCCTCCTCTACGGGAACCAAGAGGCCGTATACAGTTTCCTCTTGGGCCAGGGATGTGGGCAGGGGTGGGCAGTGTTGGTGGTCTCTTCTGCTCTGCAGCCTCAGGAGTGCCCACCTGTCCAGGCGGTAAGGTCTTTCTCCCACGGGGTTTGGGAGCAGAGAGCTGCTGCGGGCAGGGATCCGCTGGTTTGGGACTCCCGCTAAATACCGCTATGTATTTTTCTAAGTGGCCATTTGAAACCAGCTTTTTTCTTTCTTTCTTTTTTTACAG
Seq C2 exon
TTAACATTGGTACCCAGACTACAGGACCAGGTGGGGAGGGATCCTGTATTCCAGGCCAGCCTCTTTTGGCACATAGAGGATCCTCCGCTGTACACAGTGCCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012750:ENSRNOT00000055172:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]