GgaINT0010614 @ galGal4
Intron Retention
Description
NA
Coordinates
chr20:5578684-5579448:-
Coord C1 exon
chr20:5579335-5579448
Coord A exon
chr20:5578818-5579334
Coord C2 exon
chr20:5578684-5578817
Length
517 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTCTTCTCTCCTTGTTGCAGCCA
3' ss Score
10.13
Exon sequences
Seq C1 exon
CCACACCCATCCTGAGGGCTGCTGTGCAGCCCCGGCGCCTGCTGTCCAACATCAGCACCATGAGACAGGCGTCCACCCAAGTGCCTCGTGTGCCCCCCCAGGCGCAGAGAGTGG
Seq A exon
GTGAGTGCCACGGGGACCTGACTCAGGCCCTGCAACGATGGGTGTGCATGGGGCTTGGTTGCCCCCGGGGTGAGTGGGATGGTGTGATTGCTCGCAGAGGAGGTTGGGTGGTGATGGGGCTGGAGCAGTGCAGATAGAAGTGTGTAACTTTTGGGGAGAGTCGTTGCCTTAAGTCTCTGATACACAGATCGGTTTTGCTAGATGCTGCTCCTTGCATGCGTTCACTAAAGGTGATGGTGCAGCTATGGCTTGGTGCTCAGACAGAAGCAGGGGCTCTCACTTGCTCCAGGTGAACTACTGTGTGGCTGATTCCAGTAAAACATGCTCGTGTCAGGGTTGCTTGGGGCTCTGGCCTGCCACGCTGCTCTCTGGGGGGACAAGGTGTGGGTGTCTGTGCTCAGACCTGTGGGCACCAGGACAGTGCCCCTCCTGGGGACCTAGAGGCTGTTTGAGCCCACAGGGGGGATTGGCCTGATTGCAAGCCTGTGTTTAACAATCTCTTCTCTCCTTGTTGCAG
Seq C2 exon
CCAACATAGGGACGCAGACGATCAGTGCCCGGGTGCCCTCCTCACCCACCCTGCGAGGCGCCCCGCAGTACAAGTACTCCCTGGCTGTGAGGAACATCCAGCCGATGGGCAGTGTGCCACCCGGGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123:ENSGALT00000006565:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.872 A=NA C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCATCCTGAGGGCTG
R:
CATCGGCTGGATGTTCCTCAC
Band lengths:
219-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]