RnoINT0108930 @ rn6
Intron Retention
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2340322-2340941:-
Coord C1 exon
chr14:2340867-2340941
Coord A exon
chr14:2340387-2340866
Coord C2 exon
chr14:2340322-2340386
Length
480 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TGATGTGTTTTGTTTCCCAGGAA
3' ss Score
10.29
Exon sequences
Seq C1 exon
GAATTCTTTGATGTGTGGCCTGTGCTGATGGGGGAAGCCCAGCCATACTCGGGCCCACGAACACCAGATGGCCGG
Seq A exon
GTAAGTCAGGCTGATAGGTGACAACTACCTCACAGTCTGGCCAGCCTGGGTCGAACTCGGGGACGGGGAAATAGTGTAGCCCCAAGCACCTATCTACTCTCATCAGGTTGCACTGCCACAGTGATGATGGATTCTCTAGGTCTGCTTTAGCTTTCCAGAGCTCCTATAAATACTGTGATGTGCTTACACATGAGTTTTAGTGTCTATGTGGAGTATGGGCCCAGTGGGTGTGAAGGTAAATGGGATACAGGAAAGATAGATCTATGAGTGTATCTATAAGTATGAGTGCGAGGGGGGGGAGGGAGAGGGAGAGGTATACACACATAGACTATACATTGTACATGTGTAACTACTGGATGATGTACATATGACATCTTTGTGCATGGATGTCTGGGTGGGTGCCGATCTCTTTTCCCTTAAAAAAAGACTCCATTGAGAAGCTGACCAGGAATCCCTACACTGATGTGTTTTGTTTCCCAG
Seq C2 exon
GAAATTGTCTTCTACAAAGTCATTGATTATATCCTCCATGGCAAAGAAGACATCAAAGTCATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065:ENSRNOT00000000077:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
NA
C2:
PF0159021=GAF=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]