HsaINT0122179 @ hg38
Intron Retention
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr4:654080-654888:+
Coord C1 exon
chr4:654080-654154
Coord A exon
chr4:654155-654823
Coord C2 exon
chr4:654824-654888
Length
669 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CAGTGTCTTCTGCTTCTCAGGAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
GAATTTTTTGACGTGTGGTCTGTGCTGATGGGAGAGTCCCAGCCGTACTCGGGCCCACGCACGCCTGATGGCCGG
Seq A exon
GTGAGTCTTAGGGGAGGGGCCCAGGGCCTGTCCACACGCCTCTGTTTCCCTGACTCCAACTCCAGGGCAGGAGAGGGAGGGATAGGGGTGGGGTTTAGGGAGGTGGGAACTGGCCGGTGGGACCCCGGGTGCCTGTCTGTGGTCTCCACCAGGCTCCCCTGCTGCTGCACTCCAGGGATGGGGTGTCCAGGGCTGGTCCCTGAATGAGGGCCGCCAGGCTGGTCGTGAAGACCCACGTCGGCTCTGATTGTGGGGGCTCCTGCTGCCCCATCTCCCCACGTGGGACCTCCTGTGCACGTGTAGGATGCGTGTGTGTGTGTGTGTGTGAGAGTACGGGCCCAGCTTGTGTGTGGGATTGTGCGGAACACAGACTGGGAAGACAGATGTAAACCGCGGCGTGTGATGCGTGTCCCGTGAGTATTGGGGACGGTCTGCATGTGTGTGCACCCTGAGCCTGTGCATGTGTGGACATGGGTGTGAGTGCACCCGCATTCGTAGAATACCTGCGCACGGCGGAGACATCTGTTCACGTGTGTACACATGCACGGTTACGTGTGTGGGGGTGTGCATGCGTGTGGCTGTGTGTAGCTGCATGTAGCTGTGTGTGTGTGTGTGAGCCCCTCAGAGCTTGGCCAGGCAGCCCCCCGACCAGTGTCTTCTGCTTCTCAG
Seq C2 exon
GAAATTGTCTTCTACAAAGTGATCGACTACGTCCTCCACGGCAAGGAGGAGATCAAGGTCATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256:ENST00000255622:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.5=100)
A:
NA
C2:
PF0159021=GAF=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development