HsaINT1030520 @ hg38
Intron Retention
Gene
ENSG00000242686 | RP11-1191J2.2
Description
NA
Coordinates
chr4:654065-656213:-
Coord C1 exon
chr4:655082-656213
Coord A exon
chr4:654214-655081
Coord C2 exon
chr4:654065-654213
Length
868 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CTCCCTCTCCTGCCCTGGAGTTG
3' ss Score
-5.53
Exon sequences
Seq C1 exon
AAAACAGCGGAAGGTCTGTTATGATCTAAAATGGCCTCTGTGGCCCTGAGGTGAGCTTTTAAGTAGGTAAAGCAGGGCAGCTGGGGGCTTCACTGAGGCACGTGGAGCTGGCCGGGAGGGCGGGACGTGGCAGAGACAAGGAGAAGCACACATCGCCGCACCCAGTGAGGGCAAGGCTGTGGGGACTCCAGACAGCACGGGACTCACAAAGCCGCTTTCTGCCACGTAGCTTGGAAGGCCGCTGGCCAGGGCCCAGTGATCGGCTGAGGGTGTGCTGTGGGCAGAGAGCAGGGGTCAGATAGGCCACGCCGGGCTGGATGTGCGCGTGCAGGAGTCAGAGGGACTGGATGTCTGTGTGCAGGGGTGAGAGGGGCTGGTCTAGGCTGCACGTGTGTGTGCAGGGGTCAGAGGGGCTGGTCTGGGCTGCACGTGTGTGTGCAGGGGTCAGAGGGGCCAGGCTGCGCTGGATGTAGGTGTACTGGGGTCAGATGGACTGGGCGTGTGTGCAGGGGTCTGGGGGTCTCTGGCTCATGTGCCATCCTCAGCATTTACTCTCTTCTCTGAGTGCCAGGGGGTTCAGGAGGCGAGGAGGCCAGGGCGTGGGTTGGAGGACGGCTGTGCTGCCTTCTTCCTCCTCCCCAGGCTGCCGTGCTGGGGCCCCTCCCTCTTGGGAACCCCTCCCTCTCCGGAGGCCGTATGGCTTCAGCCTGCTTTCTAGGACTCAGCGTTGGTGCCTGCCCTGCCACCCTGACCCTGACTTGTGCTCAAGCCTGGCACCTGGATCCTGGTTCCTGCTTGGGGCCTGGGGATGGGGTCCCAATAGGCTTATGGGATCACAGGGCCACTGGGCCACCAGCTGCCCCTCCCTTGGCTGGAGTCCTGCCCTGACCTCCGGACTGGAGTTCCCCTCCTCTTCCAGCCCCACGGGGCCAAGACTCGGCCTCCTGGCTGGAGGCTCCACTGTCTGGGTGGGGCTGGTGGTGCCAGGGTCAAATCCTGGGGCCTTCATGCTCAATTGTTGCTGACGAGGCCGCCTGGACAGCTTGCCTGGTCCCCTGTATGTCCACTCTGGATGTCCACAGTGACTCGGGCTCCTCAGCAGCCCACGTCCTCCTCACCATCTCCCAGAACA
Seq A exon
GTGAGTCGGCTTCTGTCTCACCCCCAACTCCACTATGCCCCACGGCACACAGAGCACCACAGGTGGGGCCAGGCCAGGCCGGTGCTGCTGACTGCACCGTGGGAAGCCCTGGGAGGACGGCCCTGGGGGCTGAGCCGGGGTCTGAGGGGCGGTCCCTCCCCCGGGGACGCTTCTGGTAAAATCCTGCACTTACGGAATGACCTTGATCTCCTCCTTGCCGTGGAGGACGTAGTCGATCACTTTGTAGAAGACAATTTCCTGAGAAGCAGAAGACACTGGTCGGGGGGCTGCCTGGCCAAGCTCTGAGGGGCTCACACACACACACACAGCTACATGCAGCTACACACAGCCACACGCATGCACACCCCCACACACGTAACCGTGCATGTGTACACACGTGAACAGATGTCTCCGCCGTGCGCAGGTATTCTACGAATGCGGGTGCACTCACACCCATGTCCACACATGCACAGGCTCAGGGTGCACACACATGCAGACCGTCCCCAATACTCACGGGACACGCATCACACGCCGCGGTTTACATCTGTCTTCCCAGTCTGTGTTCCGCACAATCCCACACACAAGCTGGGCCCGTACTCTCACACACACACACACACACGCATCCTACACGTGCACAGGAGGTCCCACGTGGGGAGATGGGGCAGCAGGAGCCCCCACAATCAGAGCCGACGTGGGTCTTCACGACCAGCCTGGCGGCCCTCATTCAGGGACCAGCCCTGGACACCCCATCCCTGGAGTGCAGCAGCAGGGGAGCCTGGTGGAGACCACAGACAGGCACCCGGGGTCCCACCGGCCAGTTCCCACCTCCCTAAACCCCACCCCTATCCCTCCCTCTCCTGCCCTGGAG
Seq C2 exon
TTGGAGTCAGGGAAACAGAGGCGTGTGGACAGGCCCTGGGCCCCTCCCCTAAGACTCACCCGGCCATCAGGCGTGCGTGGGCCCGAGTACGGCTGGGACTCTCCCATCAGCACAGACCACACGTCAAAAAATTCCTGGGCAGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242686:ENST00000468356:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCCCTCCTCTTCCAGC
R:
TCTGTGCTGATGGGAGAGTCC
Band lengths:
349-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains