HsaEX1032039 @ hg38
Exon Skipping
Gene
ENSG00000242686 | RP11-1191J2.2
Description
NA
Coordinates
chr4:654065-656213:-
Coord C1 exon
chr4:655082-656213
Coord A exon
chr4:654441-654443
Coord C2 exon
chr4:654065-654213
Length
3 bp
Sequences
Splice sites
3' ss Seq
CGCATCCTACACGTGCACAGGAG
3' ss Score
4.62
5' ss Seq
GAGGTCCCA
5' ss Score
-3.96
Exon sequences
Seq C1 exon
AAAACAGCGGAAGGTCTGTTATGATCTAAAATGGCCTCTGTGGCCCTGAGGTGAGCTTTTAAGTAGGTAAAGCAGGGCAGCTGGGGGCTTCACTGAGGCACGTGGAGCTGGCCGGGAGGGCGGGACGTGGCAGAGACAAGGAGAAGCACACATCGCCGCACCCAGTGAGGGCAAGGCTGTGGGGACTCCAGACAGCACGGGACTCACAAAGCCGCTTTCTGCCACGTAGCTTGGAAGGCCGCTGGCCAGGGCCCAGTGATCGGCTGAGGGTGTGCTGTGGGCAGAGAGCAGGGGTCAGATAGGCCACGCCGGGCTGGATGTGCGCGTGCAGGAGTCAGAGGGACTGGATGTCTGTGTGCAGGGGTGAGAGGGGCTGGTCTAGGCTGCACGTGTGTGTGCAGGGGTCAGAGGGGCTGGTCTGGGCTGCACGTGTGTGTGCAGGGGTCAGAGGGGCCAGGCTGCGCTGGATGTAGGTGTACTGGGGTCAGATGGACTGGGCGTGTGTGCAGGGGTCTGGGGGTCTCTGGCTCATGTGCCATCCTCAGCATTTACTCTCTTCTCTGAGTGCCAGGGGGTTCAGGAGGCGAGGAGGCCAGGGCGTGGGTTGGAGGACGGCTGTGCTGCCTTCTTCCTCCTCCCCAGGCTGCCGTGCTGGGGCCCCTCCCTCTTGGGAACCCCTCCCTCTCCGGAGGCCGTATGGCTTCAGCCTGCTTTCTAGGACTCAGCGTTGGTGCCTGCCCTGCCACCCTGACCCTGACTTGTGCTCAAGCCTGGCACCTGGATCCTGGTTCCTGCTTGGGGCCTGGGGATGGGGTCCCAATAGGCTTATGGGATCACAGGGCCACTGGGCCACCAGCTGCCCCTCCCTTGGCTGGAGTCCTGCCCTGACCTCCGGACTGGAGTTCCCCTCCTCTTCCAGCCCCACGGGGCCAAGACTCGGCCTCCTGGCTGGAGGCTCCACTGTCTGGGTGGGGCTGGTGGTGCCAGGGTCAAATCCTGGGGCCTTCATGCTCAATTGTTGCTGACGAGGCCGCCTGGACAGCTTGCCTGGTCCCCTGTATGTCCACTCTGGATGTCCACAGTGACTCGGGCTCCTCAGCAGCCCACGTCCTCCTCACCATCTCCCAGAACA
Seq A exon
GAG
Seq C2 exon
TTGGAGTCAGGGAAACAGAGGCGTGTGGACAGGCCCTGGGCCCCTCCCCTAAGACTCACCCGGCCATCAGGCGTGCGTGGGCCCGAGTACGGCTGGGACTCTCCCATCAGCACAGACCACACGTCAAAAAATTCCTGGGCAGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242686-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCCCTGTATGTCCACT
R:
GCCTCTGTTTCCCTGACTCCA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains