HsaEX1032040 @ hg38
Exon Skipping
Gene
ENSG00000242686 | RP11-1191J2.2
Description
NA
Coordinates
chr4:653758-656213:-
Coord C1 exon
chr4:655082-656213
Coord A exon
chr4:654065-654213
Coord C2 exon
chr4:653758-653971
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTCCTGCCCTGGAGTTG
3' ss Score
-5.53
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCCTCCCCAGGCTGCCGTGCTGGGGCCCCTCCCTCTTGGGAACCCCTCCCTCTCCGGAGGCCGTATGGCTTCAGCCTGCTTTCTAGGACTCAGCGTTGGTGCCTGCCCTGCCACCCTGACCCTGACTTGTGCTCAAGCCTGGCACCTGGATCCTGGTTCCTGCTTGGGGCCTGGGGATGGGGTCCCAATAGGCTTATGGGATCACAGGGCCACTGGGCCACCAGCTGCCCCTCCCTTGGCTGGAGTCCTGCCCTGACCTCCGGACTGGAGTTCCCCTCCTCTTCCAGCCCCACGGGGCCAAGACTCGGCCTCCTGGCTGGAGGCTCCACTGTCTGGGTGGGGCTGGTGGTGCCAGGGTCAAATCCTGGGGCCTTCATGCTCAATTGTTGCTGACGAGGCCGCCTGGACAGCTTGCCTGGTCCCCTGTATGTCCACTCTGGATGTCCACAGTGACTCGGGCTCCTCAGCAGCCCACGTCCTCCTCACCATCTCCCAGAACA
Seq A exon
TTGGAGTCAGGGAAACAGAGGCGTGTGGACAGGCCCTGGGCCCCTCCCCTAAGACTCACCCGGCCATCAGGCGTGCGTGGGCCCGAGTACGGCTGGGACTCTCCCATCAGCACAGACCACACGTCAAAAAATTCCTGGGCAGAGAAGAG
Seq C2 exon
GAGGCCCACGGAGTACCGCTCGCAGTTGAGGTAGGCCCGCACCGTGTAGAAGGCCTTGTGGAACTGCCTCTCGATGTCCGTCAGCTCCTCAAACACCTTGTTGGCCGACCACAGCAGCACCTGGAGGGAGGGGCACACCTGTGGGCCTGTGGCCACTCCCACCCTCACGCCGGTCTGACCACAGCAGCAGGGGTTTAACTCAAGCCTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242686_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCCTTCATGCTCAATT
R:
GGCCAACAAGGTGTTTGAGGA
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains